XLOC_001908 (pptc7b)


Basic Information

Item Value
gene id XLOC_001908
gene name pptc7b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8437930 ~ 8468949 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003762
ATGTTATCGGTACTTTCTTATGGCAGGATCGTTGCCAGGGCTGTCCTGGGCGGACTCTCGCAAACGGACGGCAGAGACTATAGTCTGATCACGGCCAGCTGCGGCTTCGGAAAGGACTTTCGGAAGGGGATCCTGAAGAAAGGCATGTGCTACGGGGATGATGCCTGCTTCATCGCCCGACACAAGTCCGCGGATGTCTTGGGTGTTGCGGATGGTGTTGGGGGCTGGAGGGATTACGGCGTGGACCCGTCTCAGTTCTCTGCCACACTGATGAAGACGTGTGAACGGCTGGTGAAGGAGGGACGATTCACTCCCAGCAGCCCCGTGGGCATCCTGACCTCTGGCTACTATGAGCTCCTGCAGAACAAAGTACCATTGCTGGGAAGCAGCACAGCTTGCATTGTTGTTCTGGACCGTCGCAGTCACAGGATACACACCTGTAATCTGGGAGACTCGGGCTTCCTGGTGGTTCGAGGAGGAGAAGTGGTTCATCGGTCAGACGAGCAGCAGCACTACTTCAACACACCCTTCCAGCTGTCCATCGCCCCGCCGGGAGCCGAGGGTGTCGTGTTGAGCGACAGTCCTGAGGCTGCAGATAGCTCCTCCTTTGACGTCCAATTGGGGGACATTATTTTGACTGCTACTGATGGCCTCTTTGACAACATGCCTGACTACATGATCCTGCAAGAACTCAAGAAACTGAAGAACACCAACTATGATAGTATCCAGCAGACTGCACGCAGTATCGCTGAACAGGCTCATGAATTGGCCTATGACCCCAACTACATGTCCCCTTTCGCCCAGTTTGCCTGTGACAATGGGCTGAATGTAAGAGGGGGAAAGCCTGATGACATCACAGTGCTGCTGTCCATTGTGGCAGAATATAAAGACTGA

Function

symbol description
pptc7b Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Predicted to be active in mitochondrion. Orthologous to human PPTC7 (protein phosphatase targeting COQ7).

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-111 Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Predicted to be active in mitochondrion. Orthologous to human PPTC7 (protein phosphatase targeting COQ7).

Ensembl:

ensembl_id ENSDARG00000052658

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003762 True 894 mRNA 0.54 6 8437930 8468949

Neighbor

gene id symbol gene type direction distance location
XLOC_001907 hvcn1 coding upstream 24966 8401929 ~ 8412964 (+)
XLOC_001906 CU682363.1 coding upstream 94625 8343188 ~ 8343305 (+)
XLOC_001905 mtrex coding upstream 171836 8197827 ~ 8266094 (+)
XLOC_001904 pstpip2 coding upstream 295717 8101729 ~ 8142213 (+)
XLOC_001903 sub1a coding upstream 339831 8091144 ~ 8098099 (+)
XLOC_001909 BX682234.1 coding downstream 12711 8481660 ~ 8484001 (+)
XLOC_001910 si:ch211-193e13.5 coding downstream 58247 8527196 ~ 8530065 (+)
XLOC_001911 tbc1d10ab coding downstream 65801 8534750 ~ 8576218 (+)
XLOC_001912 aplnrb coding downstream 160326 8629275 ~ 8631361 (+)
XLOC_001913 NA coding downstream 178010 8646959 ~ 8650855 (+)
XLOC_001902 NA non-coding upstream 400041 8036184 ~ 8037889 (+)
XLOC_001901 NA non-coding upstream 445471 7988025 ~ 7992459 (+)
XLOC_001900 NA non-coding upstream 453348 7978517 ~ 7984582 (+)
XLOC_001899 NA non-coding upstream 536042 7870609 ~ 7901888 (+)
XLOC_001917 NA non-coding downstream 240536 8709485 ~ 8715748 (+)
XLOC_001919 NA non-coding downstream 304487 8773436 ~ 8773659 (+)
XLOC_001921 BX571955.2 non-coding downstream 393572 8862521 ~ 8868895 (+)
XLOC_001926 NA non-coding downstream 653444 9122393 ~ 9125863 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_06300308_06314871 PPTC7A, PPTC7B, PPTC7.S, PPTC7 coding CI01000304 null 6298705 ~ 6315061 (-)