XLOC_001910 (si:ch211-193e13.5)


Basic Information

Item Value
gene id XLOC_001910
gene name si:ch211-193e13.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8527196 ~ 8530065 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003764
AGTGCAGCTTTAACAAACATACCGTTAACACAGCATCATAATGACAGACTCAGCAATACCTGAAGCTGTTTATGAAAACTTCAATACCGAAGGACATCTTTATCTGAAGACACTTGCACAGAAACACCAGCCACCTCAAATCACAGGAAGCGTCTCGGTGAAAAGCAGAAAGCAGAGAGCagttgaagtgtgtgtgtgtttgctgtgtgcTCTTCTGCTGACGGCTGTTATAGTGCTCTGTGTGTTTTTCATCATCCAGAGAAAACACTTACTAACACACATCTCTAAACTCATCGAAGAACAAGAGGAGATACTAACCAACATCACTAAACTCAATGAGGAAAGAGAGGAGACGATAACCAACATCACTAACCTCATTGAAGAAAGACAGCAGATAAAAAACAAGATTGATGAACTCCAGCTTGGCTTTTATGAGCAAGATCAGCTCTCTGACAACTTTAAGTGGATTTACTACAACTTCAGTTTCTATTATATTTCATCTGAAAAGAAGAGCTGGGAGGACAGCAGACGAGACTGTCAACAGAGAAATGCAGATCTGGCCATCATAAAGAGCCCAGAGGAAAAAAAGTGTTTACTAAAGGTCGCAGCTTCAGATTTTTATTGGATTGGTCTGACAAAGAAACATTATAGACAGTGGAATTGGGTCGATGGCAGTTTATTGACCGATTGGTACTTCAATCGGCACAGTCATTATTACTGTGCTATGATCACTTCAGCAGGGTGGAGAGAAAAGTCATGTGCAAATTTAAACAAATGGATCTGCAAGAGAACAGTTTTAAAAATTACTCATTAAATAAAAGAATACATGTGAAAAAAATTAGTGTAGTAAACCCGAAACGGCAGTTGCTTTGTAATTGTAATCCCACCACTGTACAGAACAAGTTATTTGGCACTGTAATATCTTTCTGGCagctaaatatgaaaatataagtGTTATCATGTAGG

Function

symbol description
si:ch211-193e13.5 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in cerebral amyloid angiopathy; coronary artery disease; and myocardial infarction. Orthologous to several human genes including CLEC12B (C-type lectin domain family 12 member B).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-158 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in cerebral amyloid angiopathy; coronary artery disease; and myocardial infarction. Orthologous to several human genes including CLEC12B (C-type lectin domain family 12 member B).

Ensembl:

ensembl_id ENSDARG00000052656

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003764 True 966 mRNA 0.39 5 8527196 8530065

Neighbor

gene id symbol gene type direction distance location
XLOC_001909 BX682234.1 coding upstream 43195 8481660 ~ 8484001 (+)
XLOC_001908 pptc7b coding upstream 58247 8437930 ~ 8468949 (+)
XLOC_001907 hvcn1 coding upstream 114232 8401929 ~ 8412964 (+)
XLOC_001906 CU682363.1 coding upstream 183891 8343188 ~ 8343305 (+)
XLOC_001905 mtrex coding upstream 261102 8197827 ~ 8266094 (+)
XLOC_001911 tbc1d10ab coding downstream 4685 8534750 ~ 8576218 (+)
XLOC_001912 aplnrb coding downstream 99210 8629275 ~ 8631361 (+)
XLOC_001913 NA coding downstream 116894 8646959 ~ 8650855 (+)
XLOC_001914 pmaip1 coding downstream 126352 8656417 ~ 8657684 (+)
XLOC_001915 isl1l coding downstream 150665 8680730 ~ 8687894 (+)
XLOC_001902 NA non-coding upstream 489307 8036184 ~ 8037889 (+)
XLOC_001901 NA non-coding upstream 534737 7988025 ~ 7992459 (+)
XLOC_001900 NA non-coding upstream 542614 7978517 ~ 7984582 (+)
XLOC_001899 NA non-coding upstream 625308 7870609 ~ 7901888 (+)
XLOC_001917 NA non-coding downstream 179420 8709485 ~ 8715748 (+)
XLOC_001919 NA non-coding downstream 243371 8773436 ~ 8773659 (+)
XLOC_001921 BX571955.2 non-coding downstream 332456 8862521 ~ 8868895 (+)
XLOC_001926 NA non-coding downstream 592328 9122393 ~ 9125863 (+)

Expression


Co-expression Network