XLOC_001913


Basic Information

Item Value
gene id XLOC_001913
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8646959 ~ 8650855 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005680
ATGCGTAAATGTATTTTACAAAGACCATgttaaacttattaaaatatttaaactgttttattaacAGATCAGCGCTCTGACAACTATAAGTGGATTTACTACAACTTCAGTTTCTATTATACTTCATCTAAGAAGAAGAGCTGGGAGGACAGCAGACAAGACTGTCAACAGCGAAGAGCAGATCTGCTGACCATAAAgagcccaaaagaaaatGTTCAAAAGTTTTCAGTCTTCGACACATCGTTACTGTGCTCTGATGAGTTCATCAGGTTGGAAAACTGCTTCATGTACTGATTCAAACTGCTGGATCTGCAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005680 True 316 lncRNA 0.37 2 8646959 8650855

Neighbor

gene id symbol gene type direction distance location
XLOC_001912 aplnrb coding upstream 15598 8629275 ~ 8631361 (+)
XLOC_001911 tbc1d10ab coding upstream 70741 8534750 ~ 8576218 (+)
XLOC_001910 si:ch211-193e13.5 coding upstream 116894 8527196 ~ 8530065 (+)
XLOC_001909 BX682234.1 coding upstream 162958 8481660 ~ 8484001 (+)
XLOC_001908 pptc7b coding upstream 178010 8437930 ~ 8468949 (+)
XLOC_001914 pmaip1 coding downstream 5562 8656417 ~ 8657684 (+)
XLOC_001915 isl1l coding downstream 29875 8680730 ~ 8687894 (+)
XLOC_001916 si:dkey-27b3.4 coding downstream 37823 8688678 ~ 8697787 (+)
XLOC_001917 NA coding downstream 58630 8709485 ~ 8715748 (+)
XLOC_001918 itga1 coding downstream 80133 8730988 ~ 8841038 (+)
XLOC_001906 CU682363.1 non-coding upstream 303654 8343188 ~ 8343305 (+)
XLOC_001902 NA non-coding upstream 609070 8036184 ~ 8037889 (+)
XLOC_001901 NA non-coding upstream 654500 7988025 ~ 7992459 (+)
XLOC_001900 NA non-coding upstream 662377 7978517 ~ 7984582 (+)
XLOC_001899 NA non-coding upstream 745071 7870609 ~ 7901888 (+)
XLOC_001919 NA non-coding downstream 122581 8773436 ~ 8773659 (+)
XLOC_001921 BX571955.2 non-coding downstream 211666 8862521 ~ 8868895 (+)
XLOC_001926 NA non-coding downstream 471538 9122393 ~ 9125863 (+)
XLOC_001937 CABZ01061749.1 non-coding downstream 1074919 9725774 ~ 9725891 (+)

Expression


Co-expression Network