XLOC_001918 (itga1)


Basic Information

Item Value
gene id XLOC_001918
gene name itga1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8730988 ~ 8841038 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003775
TCAGTCGAGCGTCTGCGCCTTCAAGAGCAGGAGCCTCCATTCAGGCTCTGACAGGGAACCGCGAAGATGCTTTCTGGAGTCTATCAGTTCACACTAGCAGCACTACTAGCACTGCTGCCATGGCTGTCATGTTTCAATGTGGACGAGAAGAACAGGATGTCATTCAGTGGACCAGTGGAGGACATGTTCGGATACACTGTCCAGCAATTTGAGAACAGTGAGGGAAAATGGGTTCTGATTGGCTCTCCTTTGACCGGACAGCCAGCTAAACGGACTGGAGATGTCTACAGGTGCCGGGTTGGATCAAACAGTGACAGTAAATGTGAAAAATTCCTCTTGTCAGAAAACACAACAATCCCGAACATAAACGAAGTCAAGGAAAACATGACTATGGGGACGACGCTGGTGGTGAACCCAGACGGCAATGGCTTTTTGGCGTGTGGCCCTCAGTATGGGTACATGTGTGGAAAGCAGCAGTACATCACTGGCATCTGCTCTAACGTCAGCTCCTCATTTAAAGTCCTCAACTCCATCGCTCCAACTGTACGAGAGTGCAGTCAGGACATGGACATTGTCATAGTGCTGGATGGTTCTAACAGCATCTACCCCTGGGATCACATCACAGATTTTTTGGTCAAATTCCTCCAGAACATTGAAATCGGACCAGCCCGGGTGGGCATTGTGTCGTATGGTGATGATGTGGGCCACGTTTTCAACCTCAGCCAGTTCAGCAACACTAAAGAACTTGTTAAGAATGCTGCCGATATCAGACAAAGGACTGGCCACAAAACCATGACAGCTCTCGGCATTGATACCGCAAGGAAAGAGGCCTTTACAGTGGAGAGAGGAGCGAGACCAGGGGTCAAAAAAGTCATGGTGATCGTCACAGACGGAGAGTCACATGATCACCACAATCTGAAGAGTGTCATTGATCAGTGTCAAGAAGATGGCATCGAGAGGTTTGCTGTtgctGTCCTTGGTGATTATAATCGACAGAATAAAAGCATTGACGAAATAAAGAAGTTTATAGAAGAAATTGAATATATCGCTAGCGAGACTAAAAGTGATCATTTCTTCAATGTGTCGGATGAACGAGCTTTAGTGACTATTGTCGATACCCTGGGAAGCAAGATCTTTGCTTTAGAAGCCACATCTGGGAAGCACACCTCATCTTTTGAGATGGAAATGTCTCAGGCAGGATTCAGTGCTCACACGTCTAAAGCTGGTGTCATGCTGGGAGCTGTAGGTGCTTTCGACTGGAACGGGACCGTAGTGATGCAAGCTGGGAACGAATTTGTTGTTCCCAAAAAAAACACCTTCCACAACCCTTCTGTGCAGAGATATGAAGGCATGGCGGGATACGTAGGTTATGATGTGCAGTCGGCATACACACCCAACGGGGTGTTATACATCACTGGAGCACCACGGTTTAACCACAGTGGTCGTGTGACAGTGTACCGCTTTGATGGAGAAAATGTCACCATAGTGCAGACACTGAAAGGAGAACAGATTGGCTCCTATTTCGGCAGCGTCCTTCAAACGCATGACATCGATGGTGACAATTACACCGACATCCTCCTGGTCGCAGCTCCCATGTTTATGGGTCCTGAGCGGGATGAACAAGGGCAGGTCTACGTCTACAAACTCAACGagAGTGGGCTGTTTGAACATGAGATGACGCTGAAGCCGGTCAATCAGACGTGTTGTTCGGGTCACTCCCACAACAACTGTAAAATCGTCAGTAAGAACGAGCCCTGTGGTGCACGTTTCGGCACCGCGATCGCTGCAGTTCCCGACCTCAACCTGGACAAATTCAGTGACATAGTGATAGGATCACCTTTGGAGAATGACCACAGGGGAGCGGTGTATATTTACCACGGCTCACAGAAATCAATAAAGGAGAAGTATGTGCAGcGTATTGCAGCTGGAGGAGATGGAGAGAGCATGAAGTTCTTTGGCCAGTCGATTCATGGCATTATGGATTTGAATGATGATGGCATCATCGATGTCACTATTGGAGGAATAGGAGGAGCTGCACTTTATTGGTCTCGGGATGTTGCAGAGCTTCTCGCTGAGATGACTTTTGACCCTATTAAGATCAATCTCCAGCATACGTGTCAAGTCCATGGGAAGACCACCGTATGCGTGAAGACGAGAGTATGCTTCAAATATCGAATCAAGTCTGTTAAAGAGATGAACACTGGAACTGTCATCAGGTACAGTTTAACGCTGGACTCTCTGAGAGCGGTAGCCCGAGGACGCTTTAATGAAACAGAGGACAGGAGGCTGCAGAAGAACGAGTCCATCCGGAATAAGTTTTGCAGAGAGCACACCTTCTACACGGATAAACTGGATTTCAGAGACCCCATTATGGTGACGCTGGAATTCGGTCTAGCGGATGAAGACAAGGGTCCAGTTTTGGATGGAGAATTACCCACATCCCTCAACAAGACTGTAAGTTTTCCTCCTGCTAGAGTGGACTGTGGAAGTAATGAGAAGTGTGTTGCTAATCTACACCTACAAGCTTCTGCGAACATCTCAagTCTTCTCATAAAGAGTAACCAGGAGAAATTTTATGTCAATATCGACATCAAGAACACTGGAGACAACGCTTATAATACCAAAGTTACACTGAGCCACACTGAAAATATCAACTATGTCAAAGTGGAGCCTAAAGATAAGGACTGTGAAACTAATCATACCAGAATAGTGTGTGCAGTTGGATATCCTTTCCTTAAAACTAAGGACAGGGAAACCTTCAAAATCCAGTTTGAGCCCAATCCCTCTCTTATCCGAAAGGACATTGTTATTAATGTGACTGCTACCACTGATAGTGAGCAGTCAGATTCAGCGCTGAAACGTAACTTTGAGACCATCATCATCCCAGTGAGGCATGAAGCCAGCATGAGATTCACTGCGTATAACAAATATATGAAGGAGGACCACATCATACTGAAAGAAAAGGAGACGATACCCAGTGTTTTCAACCACACCAGTGTGATTGGGGATGAAGTAAAAATCAGCTACACGattgaGAAAGACCCTGACATGCCGAGTCCTCCAGTAAAGCTTACAATAATGTTTCCATATCAAACGTCTGCTAAAAACTTTCTGCTGTACCTGACAGATCTCAGCTACACAGCGGGCATTCGATGTTCCGCCGACTGGATTAACCCTTTGAAGATTCAACCTAGCAAACCACATTcactgaacacaaaaaaagagacCCTGAGCATCTATCTTTTGAGttgtaaagaaaaagaaaatccctgcCAGTCCTTTAGCTGCTTCATTCCTTCTGGAGACTTCAACCAGATCAACACCACTTTCAGACTGTGGCGGCCCACCTTTATTAAAGGAGAATTTTCCACCATTCACATGGCAGTTGATGCCAAGCTGGAGACCCAGAACACAGACTTGTTTGTGTTAAATGAAAACATCAAAACCAGAGAGGTAAGGATTCAAGTCACCAAAGACATACGAACTGGAATCCCACTGTGGATTATTATCCTTAGTAttctaataggacttttaatacTGGCACTTGTTATCTTCGCTTTATGGAAGGCTGGATTCTTCAAGAGAAAATCAGTTGAAGAAATGAATGAAGATAAAAAAGACACTGACTGAAGCCTGCGTCTCTGTAGCCTCCACCCCTCAGGTCAGCTTATTCTACACTGCTAAATCGAGATCACTAGAAATATAAA
>TCONS_00003776
atgaatgactgTAAGTTTTGgCTTTTCTTTACAGCACTGCTGCCATGGCTGTCATGTTTCAATGTGGACGAGAAGAACAGGATGTCATTCAGTGGACCAGTGGAGGACATGTTCGGATACACTGTCCAGCAATTTGAGAACAGTGAGGGAAAATGGGTTCTGATTGGCTCTCCTTTGACCGGACAGCCAGCTAAACGGACTGGAGATGTCTACAGGTGCCGGGTTGGATCAAACAGTGACAGTAAATGTGAAAAATTCCTCTTGTCAGAAAACACAACAATCCCGAACATAAACGAAGTCAAGGAAAACATGACTATGGGGACGACGCTGGTGGTGAACCCAGACGGCAATGGCTTTTTGGCGTGTGGCCCTCAGTATGGGTACATGTGTGGAAAGCAGCAGTACATCACTGGCATCTGCTCTAACGTCAGCTCCTCATTTAAAGTCCTCAACTCCATCGCTCCAACTGTACGAGAGTGCAGTCAGGACATGGACATTGTCATAGTGCTGGATGGTTCTAACAGCATCTACCCCTGGGATCACATCACAGATTTTTTGGTCAAATTCCTCCAGAACATTGAAATCGGACCAGCCCGGGTGGGCATTGTGTCGTATGGTGATGATGTGGGCCACGTTTTCAACCTCAGCCAGTTCAGCAACACTAAAGAACTTGTTAAGAATGCTGCCGATATCAGACAAAGGACTGGCCACAAAACCATGACAGCTCTCGGCATTGATACCGCAAGGAAAGAGGCCTTTACAGTGGAGAGAGGAGCGAGACCAGGGGTCAAAAAAGTCATGGTGATCGTCACAGACGGAGAGTCACATGATCACCACAATCTGAAGAGTGTCATTGATCAGTGTCAAGAAGATGGCATCGAGAGGTTTGCTGTtgctGTCCTTGGTGATTATAATCGACAGAATAAAAGCATTGACGAAATAAAGAAGTTTATAGAAGAAATTGAATATATCGCTAGCGAGACTAAAAGTGATCATTTCTTCAATGTGTCGGATGAACGAGCTTTAGTGACTATTGTCGATACCCTGGGAAGCAAGATCTTTGCTTTAGAAGCCACATCTGGGAAGCACACCTCATCTTTTGAGATGGAAATGTCTCAGGCAGGATTCAGTGCTCACACGTCTAAAGCTGGTGTCATGCTGGGAGCTGTAGGTGCTTTCGACTGGAACGGGACCGTAGTGATGCAAGCTGGGAACGAATTTGTTGTTCCCAAAAAAAACACCTTCCACAACCCTTCTGTGCAGAGATATGAAGGCATGGCGGGATACGTAGGTTATGATGTGCAGTCGGCATACACACCCAACGGGGTGTTATACATCACTGGAGCACCACGGTTTAACCACAGTGGTCGTGTGACAGTGTACCGCTTTGATGGAGAAAATGTCACCATAGTGCAGACACTGAAAGGAGAACAGATTGGCTCCTATTTCGGCAGCGTCCTTCAAACGCATGACATCGATGGTGACAATTACACCGACATCCTCCTGGTCGCAGCTCCCATGTTTATGGGTCCTGAGCGGGATGAACAAGGGCAGGTCTACGTCTACAAACTCAACGagAGTGGGCTGTTTGAACATGAGATGACGCTGAAGCCGGTCAATCAGACGTGTTGTTCGGGTCACTCCCACAACAACTGTAAAATCGTCAGTAAGAACGAGCCCTGTGGTGCACGTTTCGGCACCGCGATCGCTGCAGTTCCCGACCTCAACCTGGACAAATTCAGTGACATAGTGATAGGATCACCTTTGGAGAATGACCACAGGGGAGCGGTGTATATTTACCACGGCTCACAGAAATCAATAAAGGAGAAGTATGTGCAGcGTATTGCAGCTGGAGGAGATGGAGAGAGCATGAAGTTCTTTGGCCAGTCGATTCATGGCATTATGGATTTGAATGATGATGGCATCATCGATGTCACTATTGGAGGAATAGGAGGAGCTGCACTTTATTGGTCTCGGGATGTTGCAGAGCTTCTCGCTGAGATGACTTTTGACCCTATTAAGATCAATCTCCAGCATACGTGTCAAGTCCATGGGAAGACCACCGTATGCGTGAAGACGAGAGTATGCTTCAAATATCGAATCAAGTCTGTTAAAGAGATGAACACTGGAACTGTCATCAGGTACAGTTTAACGCTGGACTCTCTGAGAGCGGTAGCCCGAGGACGCTTTAATGAAACAGAGGACAGGAGGCTGCAGAAGAACGAGTCCATCCGGAATAAGTTTTGCAGAGAGCACACCTTCTACACGTCGGATAAACTGGATTTCAGAGACCCCATTATGGTGACGCTGGAATTCGGTCTAGCGGATGAAGACAAGGGTCCAGTTTTGGATGGAGAATTACCCACATCCCTCAACAAGACTatCGCATTAGTGGACTGTGGAAGTAATGAGAAGTGTGTTGCTAATCTACACCTACAAGCTTCTGCGAACATCTCAagTCTTCTCATAAAGAGTAACCAGGAGAAATTTTATGTCAATATCGACATCAAGAACACTGGAGACAACGCTTATAATACCAAAGTTACACTGAGCCACACTGAAAATATCAACTATGTCAAAGTGGAGCCTAAAGATAAGGACTGTGAAACTAATCATACCAGAATAGTGTGTGCAGTTGGATATCCTTTCCTTAAAACTAAGGACAGGGAAACCTTCAAAATCCAGTTTGAGCCCAATCCCTCTCTTATCCGAAAGGACATTGTTATTAATGTGACTGCTACCACTGATAGTGAGCAGTCAGATTCAGCGCTGAAACGTAACTTTGAGACCATCATCATCCCAGTGAGGCATGAAGCCAGCATGAGATTCACTGCTAACAAATATATGAAGGAGGACCACATCATACTGAAAGAAAAGGAGACGATACCCAGTGTTTTCAACCACACCAGTGTGATTGGGGATGAAGTAAAAATCAGCTACACGattgaGAAAGACCCTGACATGCCGAGTCCTCCAGTAAAGCTTACAATAATGTTTCCATATCAAACGTCTGCTAAAAACTTTCTGCTGTACCTGACAGATCTCAGCTACACAGCGGGCATTCGATGTTCCGCCGACTGGATTAACCCTTTGAAGATTCAACCTAGCAAACCACATTcactgaacacaaaaaaagagacCCTGAGCATCTATCTTTTGAGttgtaaagaaaaagaaaatccctgcCAGTCCTTTAGCTGCTTCATTCCTTCTGGAGACTTCAACCAGATCAACACCACTTTCAGACTGTGGCGGCCCACCTTTATTAAAGGAGAATTTTCCACCATTCACATGGCAGTTGATGCCAAGCTGGAGACCCAGAACACAGACTTGTTTGTGTTAAATGAAAACATCAAAACCAGAGAGGTAAGGATTCAAGTCACCAAAGACATACGAACTGGAATCCCACTGTGGATTATTATCCTTAGTAttctaataggacttttaatacTGGCACTTGTTATCTTCGCTTTATGGAAGGCTGGATTCTTCAAGAGAAAATCAGTTGAAGAAATGAATGAAGATAAAAAAGACACTGACTGA

Function

symbol description
itga1 Predicted to enable metal ion binding activity. Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Orthologous to human ITGA1 (integrin subunit alpha 1).

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04810 Regulation of actin cytoskeleton
ko04640 Hematopoietic cell lineage
ko05165 Human papillomavirus infection
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy
ko04147 Exosome
ko04515 Cell adhesion molecules
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-091118-115 Predicted to enable metal ion binding activity. Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Orthologous to human ITGA1 (integrin subunit alpha 1).

Ensembl:

ensembl_id ENSDARG00000074316

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003775 False 3707 mRNA 0.46 30 8730988 8841038
TCONS_00003776 True 3543 mRNA 0.45 30 8767541 8840961

Neighbor

gene id symbol gene type direction distance location
XLOC_001917 NA coding upstream 15240 8709485 ~ 8715748 (+)
XLOC_001916 si:dkey-27b3.4 coding upstream 33201 8688678 ~ 8697787 (+)
XLOC_001915 isl1l coding upstream 43094 8680730 ~ 8687894 (+)
XLOC_001914 pmaip1 coding upstream 73304 8656417 ~ 8657684 (+)
XLOC_001913 NA coding upstream 80133 8646959 ~ 8650855 (+)
XLOC_001920 itga2.1 coding downstream 5995 8847033 ~ 8858205 (+)
XLOC_001921 BX571955.2 coding downstream 21483 8862521 ~ 8868895 (+)
XLOC_001922 itga2.3 coding downstream 28430 8869468 ~ 8884205 (+)
XLOC_001923 itga2.2 coding downstream 44731 8885769 ~ 8940896 (+)
XLOC_001924 fstb coding downstream 127165 8968203 ~ 8976823 (+)
XLOC_001906 CU682363.1 non-coding upstream 387683 8343188 ~ 8343305 (+)
XLOC_001902 NA non-coding upstream 693099 8036184 ~ 8037889 (+)
XLOC_001901 NA non-coding upstream 738529 7988025 ~ 7992459 (+)
XLOC_001926 NA non-coding downstream 281355 9122393 ~ 9125863 (+)
XLOC_001937 CABZ01061749.1 non-coding downstream 884736 9725774 ~ 9725891 (+)
XLOC_001938 NA non-coding downstream 982159 9823197 ~ 9835446 (+)
XLOC_001939 NA non-coding downstream 1049653 9890691 ~ 9895543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_06123328_06162242 ITGA1 coding CI01000304 null 6120800 ~ 6162242 (-)