XLOC_019424 (celf4)


Basic Information

Item Value
gene id XLOC_019424
gene name celf4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 12079878 ~ 12272543 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038308
ATGAACAGGCCAATCCAGGTGAAGCCAGCTGACAGTGAGAGCAGGGGAGAAGACAGAAAACTGTTTGTGGGTATGCTGAATAAGCAGCAGTGTGAGGATGACGTGCGGCGTCTCTTCGAGTCTTTCGGCAGCATTGAGGAGTGCACCATCCTCAGAGGACCTGACGGAAACAGCAAAGGTTGTGCGTTTGTGAAGTACTCCACTCATGCAGAAGCTCAGGCCGCTATTAGTGCTTTACATGGCAGCCAAACCATGCCTggcgCTTCCTCCAGCCTGGTGGTGAAGTTTGCAGACACAGATAAGGAACGGACCATTCGACGCATGCAGCAGATGGCCGGTCAGATGGGCATCTTCAATCCCATGGCCCTGCAGTTTGGAGCGTACGGTGCCTATGCACAGGTTCAGCAGCAGGCAGCGCTGATGGCGTCGGTGGGTCAGGGGGGGTATCTCAGCCCGATGGCTGCTTTTGCTGCCGCACAGATGCAACACATGGCCACCATCAACGGCCTCCCTGGGGCTCCCATGACCCCAACATCAGGTGGAAGCACACCCCCTGGCATCACAGCACCCACAGTGACCAGCATTCCATCTCCGATTAGTGTGAACGGTTTCACAGGCCTGCCTCCTCCTCAAGCCAACGGCCAGGCCCCGGCGGAGGCCATGTTTACCAACGGCATCCACCCGTACCCAGTTTTGCAGGAAGTGGTGTTTAGGGAAGACTCGGAGAAGGGCGGCCTGGGCGTCGCACAGAGAAGTTGTTTTGGGGTTCAGGGAAGCTGCTTCCTGTCGTCTCTCTCAGAAGctcAGAGTCCCACCGCTGCAGACCCTCTACAGCAGGCCTATGCCGGAGTCCAACAATATGCAGCCTTCCCCGCTGCATATGGACAGATCAGCCAGGCCTTTCCCCAGCCGCCTCCCATCATCCCTCAGCAGCAGAGAGAAGGGCCGGAGGGCTGTAACCTGTTTATTTATCACCTCCCTCAGGAGTTTGGGGACGGCGAGCTGATGCAGATGTTCCTGCCTTTCGGTAATGTCATCTCCTCCAAAGTGTTTGTGGATCGGGCGACAAACCAAAGTAAATGCTTTGGTTTCGTGAGTTTTGATAACCCGGGCAGCGCTCAGGCCGCAATCCAGTCCATGAACGGCTTTCAGATCGGCATGAAGAGACTCAAAGTGCAGCTGAAGAGGCCAAAGGACGCCAACCGCCCATATTAGCCCCGTCCCGAGCCCCAGACACCCCTGACCCTGGGGGTGAAGGCCGCCGCTGCGCACAGGGAAAAGACAGGTTTTGTAGAGCTGGAACACATGTTGATAACATGCCAAATGTATTTGAAATCACAACAGATCAAGATCATTGGGGCTGGGGATAGAACTGAAGCGGGACATGAGGAGGACGGAGCCGTGTGATTTTTCCACCACCACCACGAGGCTCAATGGACCTTTTTTTTTGGACTTCAGTGTTAAACTCAGGGGAGCCGCGGTGTTACCGGACCATACCGTACTCCCTTCTCCAAACCCCCGAGCCCTTATTTTGCAGGACCACTGGACACTACTGAAGACCAacacaaaagtatatatttaaaaaaaaaagaaaaaaaa
>TCONS_00038309
aatgcaaaaaataaaagggTAGCTAGAAGCAGGGGCGAGGGGAACGGAGGTAAAGCGAACGCTGTcggtctgtctctctctttctctctctctggttTATatcacatgaatgaatgaattgagtaGTAAAAGGACACGTACAAGGAAACACGCCTCCGCCTGGACGACAAAACGCGTTTGATATTTGACTTGTGTTCAATGGTACGTGTTTGCATCTGCCAAAACCAGAGTAGGACGTCTCATCCCCCGTCATCTGAAGCACTCCAGAAGGTGTAGCAAGCTGAAAGTCCTCGCGGCGAACATGGCAACTTTAACGAACGGACAGGTGGACGCCGCGGTGCACGGAGGAGCGGCCAGTACGAACGGGCTCGTGAACGGAATAAGCCACACTCACAGTCCCGCGAGCTGCGCCACCATTCCCATGAAGGACCACGATGCCATCAAACTGTTCATCGGACAGATACCCCGCAATCTGGACGAGAAGGACCTCCGGCCGCTCTTCGAGGAATTTGGCAAGATCTACGAGCTCACCGTGCTGAAAGACCGCTTCACTGGCATGCACAAAGGCTGTGCCTTCCTCACATACTGTGCGAGAGAATCTGCGTTAAAAGCTCAGACGGCGCTTCACGAGCAGAAGACGCTACCTGGGATGAACAGGCCAATCCAGGTGAAGCCAGCTGACAGTGAGAGCAGGGGAGAAGACAGAAAACTGTTTGTGGGTATGCTGAATAAGCAGCAGTGTGAGGATGACGTGCGGCGTCTCTTCGAGTCTTTCGGCAGCATTGAGGAGTGCACCATCCTCAGAGGACCTGACGGAAACAGCAAAGGTTGTGCGTTTGTGAAGTACTCCACTCATGCAGAAGCTCAGGCCGCTATTAGTGCTTTACATGGCAGCCAAACCATGCCTggcgCTTCCTCCAGCCTGGTGGTGAAGTTTGCAGACACAGATAAGGAACGGACCATTCGACGCATGCAGCAGATGGCCGGTCAGATGGGCATCTTCAATCCCATGGCCCTGCAGTTTGGAGCGTACGGTGCCTATGCACAGGTTCAGCAGCAGGCAGCGCTGATGGCGTCGGTGGGTCAGGGGGGGTATCTCAGCCCGATGGCTGCTTTTGCTGCCGCACAGATGCAACACATGGCCACCATCAACGGCCTCCCTGGGGCTCCCATGACCCCAACATCAGGTGGAAGCACACCCCCTGGCATCACAGCACCCACAGTGACCAGCATTCCATCTCCGATTAGTGTGAACGGTTTCACAGGCCTGCCTCCTCCTCAAGCCAACGGCCAGGCCCCGGCGGAGGCCATGTTTACCAACGGCATCCACCCGTACCCAGTTTTGCAGGAAGTGGTGTTTAGGGAAGACTCGGAGAAGGGCGGCCTGGGCGTCGCACAGAGAAGTTGTTTTGGGGTTCAGGGAAGCTGCTTCCTGTCGTCTCTCTCAGAAGctcAGAGTCCCACCGCTGCAGACCCTCTACAGCAGGCCTATGCCGGAGTCCAACAATATGCAGCCTTCCCCGCTGCATATGGACAGATCAGCCAGGCCTTTCCCCAGCCGCCTCCCATCATCCCTCAGCAGCAGAGAGAAGGGCCGGAGGGCTGTAACCTGTTTATTTATCACCTCCCTCAGGAGTTTGGGGACGGCGAGCTGATGCAGATGTTCCTGCCTTTCGGTAATGTCATCTCCTCCAAAGTGTTTGTGGATCGGGCGACAAACCAAAGTAAATGCTTTGGTTTCGTGAGTTTTGATAACCCGGGCAGCGCTCAGGCCGCAATCCAGTCCATGAACGGCTTTCAGATCGGCATGAAGAGACTCAAAGTGCAGCTGAAGAGGCCAAAGGACGCCAACCGCCCATATTAGCCCCGTCCCGAGCCCCAGACACCCCTGACCCTGGGGGTGAAGGCCGCCGCTGCGCACAGGGAAAAGACAGGTTTTGTAGAGCTGGAACACATGTTGATAACATGCCAAATGTATTTGAAATCACAACAGATCAAGATCATTGGGGCTGGGGATAGAACTGAAGCGGGACATGAGGAGGACGGAGCCGTGTGATTTTTCCACCACCACCACGAGGCTCAATGGACCTTTTTTTTTGGACTTCAGTGTTAAACTCAGGGGAGCCGCGGTGTTACCGGACCATACCGTACTCCCTTCTCCAAACCCCCGAGCCCTTATTTTGCAGGACCACTGGACACTACTGAAGACCAacacaaaagtatatattt
>TCONS_00038310
aatgcaaaaaataaaagggTAGCTAGAAGCAGGGGCGAGGGGAACGGAGGTAAAGCGAACGCTGTcggtctgtctctctctttctctctctctggttTATatcacatgaatgaatgaattgagtaGTAAAAGGACACGTACAAGGAAACACGCCTCCGCCTGGACGACAAAACGCGTTTGATATTTGACTTGTGTTCAATGGTACGTGTTTGCATCTGCCAAAACCAGAGTAGGACGTCTCATCCCCCGTCATCTGAAGCACTCCAGAAGGTGTAGCAAGCTGAAAGTCCTCGCGGCGAACATGGCAACTTTAACGAACGGACAGGTGGACGCCGCGGTGCACGGAGGAGCGGCCAGTACGAACGGGCTCGTGAACGGAATAAGCCACACTCACAGTCCCGCGAGCTGCGCCACCATTCCCATGAAGGACCACGATGCCATCAAACTGTTCATCGGACAGATACCCCGCAATCTGGACGAGAAGGACCTCCGGCCGCTCTTCGAGGAATTTGGCAAGATCTACGAGCTCACCGTGCTGAAAGACCGCTTCACTGGCATGCACAAAG

Function

symbol description
celf4 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection; positive regulation of mRNA splicing, via spliceosome; and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF4 (CUGBP Elav-like family member 4).

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006397 mRNA processing biological_process
GO:0048026 positive regulation of mRNA splicing, via spliceosome biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-300 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection; positive regulation of mRNA splicing, via spliceosome; and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF4 (CUGBP Elav-like family member 4).

Ensembl:

ensembl_id ENSDARG00000070045

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038308 False 1599 mRNA 0.55 12 12079878 12119711
TCONS_00038309 False 2229 mRNA 0.55 14 12079897 12272543
TCONS_00038310 True 566 mRNA 0.52 1 12271978 12272543

Neighbor

gene id symbol gene type direction distance location
XLOC_019423 tpgs2 coding downstream 43744 12023796 ~ 12036134 (-)
XLOC_019422 zgc:64106 coding downstream 83109 11984805 ~ 11996769 (-)
XLOC_019420 nop56 coding downstream 109679 11958758 ~ 11970199 (-)
XLOC_019421 CT027620.1 coding downstream 118574 11961238 ~ 11961304 (-)
XLOC_019419 ube2r2 coding downstream 223735 11845241 ~ 11856143 (-)
XLOC_019425 NA coding upstream 16064 12288607 ~ 12332807 (-)
XLOC_019426 AL928707.3 coding upstream 83042 12355585 ~ 12435062 (-)
XLOC_019427 NA coding upstream 176402 12448945 ~ 12482236 (-)
XLOC_019428 NA coding upstream 223165 12495708 ~ 12545977 (-)
XLOC_019429 CR293531.2 coding upstream 240064 12512607 ~ 12512722 (-)
XLOC_019416 NA non-coding downstream 348860 11722608 ~ 11731018 (-)
XLOC_019415 NA non-coding downstream 422835 11565882 ~ 11657043 (-)
XLOC_019414 NA non-coding downstream 522191 11550677 ~ 11557687 (-)
XLOC_019413 NA non-coding downstream 530033 11546623 ~ 11549845 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_12092807_12095434 NA coding CI01000006 null 12092389 ~ 12095668 (+)