XLOC_019467


Basic Information

Item Value
gene id XLOC_019467
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 15817350 ~ 15819871 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039600
tatatattcaagtTTGAATAACAAAacactagaaaaaaaaacagatgcaaaTGAAAAATAAGATTTTAAGACAATAATACCGAATTAAAAACAAGGGGAAAAAACATTGAATACATTTCAAAATGGTCCCAGTACAGTTTAATATACAAGTATCTTATAAAAGCGAgggaaagataaaaataaaataaaagcaaggcAACAGACaggaatgaaatataaataaacttacatTATGTACAGAAGGGTGCACAAAGAGGaaagaataaaaacagaaaaaggaACGTTTTAGTATTAACGGAACAGTCGAAAATTTAGGAACGATCCAATCAGATCTCAGACGGAATCCTCAAAGTGTGATTGTTGGAGAGCACAACCCTTTACTTTTCAGTCTTTTTCCTCATTCCTCCAAACACGTGGCTTCCCTTTTGGATCAGATTGCTCTCCATGCACTAAGAGCTTGTGTTTTGAGGGCTTTGACCTGAAGTCCGGTACTTCCTCCAGGATGGTTTTATATGGTATGTAAagggaataataataatgaaaaaagctTAAAATCCTTGACACACCATGGAGCAACTAACCAGTAAACGCTTTGATTCCATTACAGATTATCATACGCCATACGGGCCACGATGTCCGGTTGTGGGATTGGGACATGTGGGCTACAAAAGAGCAGGCGGGAATATGCTCGAAGCTACAGGAACGTGATGAGGCACTTTCCCACCTCTGAAGAAGGATCCGGCCCCTGAGAGGCTGCTATTGGCACAGTGTCTCATATGGAAAGGGTTAGTGTGACGAAGCAAATCACAACAGTCGATAAATCACACAATATTCAAGCACATCCGTCAGCATTTCATGGGATATCTTAAGTTGAAGCTGAATATACGAGATCCCGTAACTCATTGACTGAAACATCATGGAtctgaaataatatataaaaggtTTCCATCGAGATCCCTGTTAACATGGAATGACCGATGGGTGAGTGAATTCGAGCGACACCCATTGGGTTTTACATACATTTAGGAGCTAAAACATTTCATAAAACGTACATGACCACAAGGCAGTGTGGATTGAGGGCTTAAATGGTTTGTTCACGACAAAATGAATCCCGCCATTATTGATTCATCGTCTTGTTGCTCCATTGAAAGTCACACAAACTTCAATTAAACGAAGAGACCAAAAAACTGCTTTATACTGCATTTAAGCCTTTGTTCATGTATAAAGACCAATAATAAAAAGAAGCACAAAAATACCTAATGCAcaatagtgttgtcacgataccgGAATTCATtaccaatcgatactgacattttaaaaacccactaacatttgagcgctgttgagcacgttcttaaacacgctcaacagaaatgactgtgattggctgtgaaggtcatcagatCACCGAACTCactttactgagtgtaaccagaGATTCAGGGACACTGGTGTGTTTTAAAGCTAATCGCTCCTATGTcggcttatagacaaaccagctgatcgacgtgactttgaaaGTTCTCAGAAATCTCCTgtgaacatttgagcactgttgattATGTTTGTTAAAAGCGTTAATTTTCTATTGTTCACAAACATTCTCAACAGCGGTCAAATGTTTACaggaaattaactttttttttttttattgtagtatcGACTGGTACCAAGTTCCATGaatccagtattgtgacaaccctagcAAGGATCAAGCAAGCTCGATTGAGTCTCGGTGACCAAATTTgaatgtgtaaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039600 True 1759 lncRNA 0.38 2 15817350 15819871

Neighbor

gene id symbol gene type direction distance location
XLOC_019466 mmp11b coding downstream 142548 15636540 ~ 15674802 (-)
XLOC_019465 NA coding downstream 244694 15474456 ~ 15572656 (-)
XLOC_019464 NA coding downstream 498953 15299954 ~ 15318397 (-)
XLOC_019463 sfswap coding downstream 534898 15125497 ~ 15282452 (-)
XLOC_019462 mmp17a coding downstream 771285 14892050 ~ 15046065 (-)
XLOC_019468 NA coding upstream 19707 15839578 ~ 15845578 (-)
XLOC_019469 lhx5 coding upstream 93257 15913128 ~ 15929041 (-)
XLOC_019470 mzt2b coding upstream 259253 16079124 ~ 16087880 (-)
XLOC_019471 zgc:193801 coding upstream 269515 16089386 ~ 16102501 (-)
XLOC_019472 cyb561a3b coding upstream 283067 16102938 ~ 16114061 (-)
XLOC_019455 NA non-coding downstream 1050794 14766080 ~ 14766556 (-)
XLOC_019454 NA non-coding downstream 1051402 14764193 ~ 14765948 (-)
XLOC_019446 BX470221.1 non-coding downstream 1948572 13868662 ~ 13868778 (-)
XLOC_019473 NA non-coding upstream 334709 16154580 ~ 16169064 (-)
XLOC_019476 NA non-coding upstream 818198 16638069 ~ 17000916 (-)
XLOC_019477 NA non-coding upstream 909510 16729381 ~ 16734248 (-)
XLOC_019478 BX005302.1 non-coding upstream 1072116 16891987 ~ 16939257 (-)

Expression


Co-expression Network