XLOC_001948 (swi5)


Basic Information

Item Value
gene id XLOC_001948
gene name swi5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10728870 ~ 10737250 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003815
AGACTTTTACTTTACCCAACCAAGCTGCGGTGCACCGGAAGAGCATCAATGCACCAATCAAAAGGCTCACACCAGTACGAACCAATCAGAATTAGTACGTATGATGACGCAAGTACACGCAGCAAGGCGGGAATTTCTTCATCAGAAACTGCGCGGGACGGTTCACTGCTCAAGAGCGCCTCATTAAGAGCTTAGAGGTCATGTAAAtcatatgttttcatttttatctttattCTCAGTAGAAAGAAATGAACGAGACAGCAGAACTACAAATGAACACCCAACCCGTTAGCGATGATGCGCACGTCAAAGTTACGCCACGTCAAGGGGGCGTGTCTTCAAAAAGAAGACTTTCAGAATCCAGATGTAACTCTAGGAGCGTCAACTCAGGTTTTAAATCTCCAGTACTGAAGCCTAGTATGGTGAAATCTCCTGTTTGTCTTGAGGAAGAAGTGAAAGAGCTCAAGAAAACACAGGATTGTCTGGATTCAGAGATTGCCTCACTGGAAAAAGAAGGATTTGTTGTACAAGAGCTGGATCAGCACATCGACCTGCTGCATGAATACAATGACATCAAAGACATTGGACAAACTCTACTGGGCAGACTAGCCGGCCTGCGTGGAGTGACCACACGAGACTTGTACAGTCACTTTGGCCTTGAGTTGGATGACTGACAGATATTGGAAGGGCCTCATAATACTGTTAGTGTTATATCTTTGTATTTATACAGAACACACCAGTGTTTTCTTCATGCTATTGGGCTGAATGAGCCTAATTAAGAAGTTTCTGTCTGAAATAACTCTGATTTAATTTTACATACAAACCTTCAAAGAAATAGAAAGGTCTTTTGTTAACACTGTGATAAGAATTGGTTTGACATTTTTCTCTGAGCATCGTTTTCCTCATATTGTGTTGACGTGTTATCATGCACTCAGGATTATTGTGTATGAACCGGTGTCTACGGCCATTGTGTTGTCATCCAAATCTGGTGAATTAGAGGAACAGTTTGTTTAAAAATTCAATGTCTGTCATGAATTCCTTaccttttattttgatttgaaatCCAAAATGAGATGACATGTAGCTTTGAAGATGCTCGCGTTGTAAGGAAAAGAGCAACATGAACATTTTTCGAAACGTCTCATTTTGGGCTCTCCAAATGAAAGGAAGTCAGATTTGGCACAATGATGAAAGgttcatttatgggtgaactgttcctttaggGAGTACTGTGTCAtaaattctgctttattattgttattattatttttgttttaccaataaatgcatttatttgaaagttaattaaataaa
>TCONS_00003816
GGCGGGAATTTCTTCATCAGAAACTGCGCGGGACGGTTCACTGCTCAAGAGCGCCTCATTAAGAGCTTAGAGGTCATGTAAAtcatatgttttcatttttatctttattCTCAGTAGAAAGAAATGAACGAGACAGCAGAACTACAAATGAACACCCAACCCGTTAGCGATGATGCGCACGTCAAAGTTACGCCACGTCAAGGGGGCGTGTCTTCAAAAAGAAGACTTTCAGAATCCAGATGTAACTCTAGGAGCGTCAACTCAGGTTTTAAATCTCCAGTACTGAAGCCTAGTATGGTGAAATCTCCTGTTTGTCTTGAGGAAGAAGTGAAAGAGCTCAAGAAAACACAGGATTGTCTGGATTCAGAGATTGCCTCACTGGAAAAAGAAGGATTTGTTGTACAAGAGCTGGATCAGCACATCGACCTGCTGCATGAATACAATGACATCAAAGACATTGGACAAACTCTACTGGGCAGACTAGGTAAGACGTGATgcctttaataatacattttaaaaggtgTTTTTTGCCAGTCTGCTACCAGACATTCATACCACAATAACCTCCTCTCCATAAACACTTGTGGCCTACACACTTCTGCCATCACACTCATCTAAGTGGGTTACAGCCTCCGTACGCTCGCTCTGCATTTCTCACCAGTGTCAAGATTATGATAATGGCATCCTCTGGTATTACCGCTGCATTCTGTAAGATAATGGACCCTTTTAGACTCCCAGCATGCTGAGTTTCTCCGGCCTCACAGTGACTTCAGCTGCTCTGAGGGCTGGAGGGGGTCATTTTTCCCCATGTGACCATTGATAAAGACAACTGTCTCTCTGTGTTTCCTACAGCCGGCCTGCGTGGAGTGACCACACGAGACTTGTACAGTCACTTTGGCCTTGAGTTGGATGACTGACAGATATTGGAAGGGCCTCATAATACTGTTAGTGTTATATCTTTGTATTTATACAGAACACACCAGTGTTTTCTTCATGCTATTGGGCTGAATGAGCCTAATTAAGAAGTTTCTGTCTGAAATAACTCTGATTTAATTTTACATACAAACCTTCAAAGAAATAGAAAGGTCTTTTGTTAACACTGTGATAAGAATTGGTTTGACATTTTTCTCTGAGCATCGTTTTCCTCATATTGTGTTGACGTGTTATCATGCACTCAGGATTATTGTGTATGAACCGGTGTCTACGGCCATTGTGTTGTCATCCAAATCTGGTGAATTAGAGGAACAGTTTGTTTAAAAATTCAATGTCTGTCATGAATTCCTTaccttttattttgatttgaaatCCAAAATGAGATGACATGTAGCTTTGAAGATGCTCGCGTTGTAAGGAAAAGAGCAACATGAACATTTTTCGAAACGTCTCATTTTGGGCTCTCCAAATGAAAGGAAGTCAGATTTGGCACAATGATGAAAGgttcatttatgggtgaactgttcctttaggGAGTACTGTGTCAtaaattctgctttattattgttattattatttttgttttaccaataaatgcatttatttgaaagttaattaaataaa

Function

symbol description
swi5 Predicted to be involved in double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA repair. Predicted to be part of Swi5-Sfr1 complex and Swi5-Swi2 complex. Orthologous to human SWI5 (SWI5 homologous recombination repair protein).

GO:

id name namespace
GO:0071479 cellular response to ionizing radiation biological_process
GO:0000730 DNA recombinase assembly biological_process
GO:0032798 Swi5-Sfr1 complex cellular_component

KEGG:

id description
ko04111 Cell cycle - yeast
ko03000 Transcription factors
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-091204-368 Predicted to be involved in double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA repair. Predicted to be part of Swi5-Sfr1 complex and Swi5-Swi2 complex. Orthologous to human SWI5 (SWI5 homologous recombination repair protein).

Ensembl:

ensembl_id ENSDARG00000078492

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003815 False 1314 mRNA 0.39 5 10728870 10737250
TCONS_00003816 True 1557 lncRNA 0.40 4 10728995 10737250

Neighbor

gene id symbol gene type direction distance location
XLOC_001947 fam163ba coding upstream 28101 10636237 ~ 10700769 (+)
XLOC_001946 sardh coding upstream 163902 10386435 ~ 10564968 (+)
XLOC_001945 cercam coding upstream 348739 10351685 ~ 10380131 (+)
XLOC_001944 urm1 coding upstream 402845 10313024 ~ 10326025 (+)
XLOC_001943 NA coding upstream 433081 10288148 ~ 10295789 (+)
XLOC_001949 slc27a4 coding downstream 1630 10738880 ~ 10782810 (+)
XLOC_001950 ptgdsa coding downstream 51561 10788811 ~ 10796936 (+)
XLOC_001951 ambp coding downstream 64314 10801564 ~ 10824286 (+)
XLOC_001952 cdc37l1 coding downstream 235545 10972795 ~ 10998499 (+)
XLOC_001953 ugcg coding downstream 300942 11038192 ~ 11094127 (+)
XLOC_001941 AL935269.1 non-coding upstream 533268 10178101 ~ 10195602 (+)
XLOC_001940 BX248503.1 non-coding upstream 815693 9913063 ~ 9913177 (+)
XLOC_001939 NA non-coding upstream 833327 9890691 ~ 9895543 (+)
XLOC_001938 NA non-coding upstream 893424 9823197 ~ 9835446 (+)
XLOC_001954 CR931761.1 non-coding downstream 378604 11115854 ~ 11115970 (+)
XLOC_001955 NA non-coding downstream 522904 11260154 ~ 11312342 (+)
XLOC_001959 BX640403.1 non-coding downstream 761443 11498693 ~ 11498809 (+)
XLOC_001960 NA non-coding downstream 776136 11513386 ~ 11518739 (+)
XLOC_001961 NA non-coding downstream 915344 11652594 ~ 11665963 (+)

Expression


Co-expression Network