Fish Transcriptome and Expression Database

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model fish

XLOC_019643 (BX465841.1)

Basic Information

Item	Value
gene id	XLOC_019643
gene name	BX465841.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007132.7
NCBI id	CM002905.2
chromosome length	45934066
location	26701821 ~ 26701954 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038671
GCCGGCAGCTAGTACATTCAGCAGCtagctctgcaactctcacatggtcacccactgaagctaagctgggctgcacctggtcagtacctggatgggagaccatatggAAAAGCTACagtaggttgctgccagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000098328

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00038671	True	134	rRNA	0.54	1	26701821	26701954

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_019642	bscl2	coding	downstream	9862	26678484 ~ 26691959 (-)
XLOC_019641	nxf1	coding	downstream	23987	26665014 ~ 26677834 (-)
XLOC_019640	NA	coding	downstream	98180	26600961 ~ 26603641 (-)
XLOC_019639	CR631122.1	coding	downstream	143553	26555989 ~ 26558268 (-)
XLOC_019638	rce1b	coding	downstream	179829	26514603 ~ 26521992 (-)
XLOC_019644	banf1	coding	upstream	7847	26709801 ~ 26715270 (-)
XLOC_019645	NA	coding	upstream	118968	26820922 ~ 26825306 (-)
XLOC_019646	lrfn4a	coding	upstream	206673	26908627 ~ 26918903 (-)
XLOC_019647	ppp1r14ba	coding	upstream	294322	26996276 ~ 27010837 (-)
XLOC_019648	slc8a4a	coding	upstream	345379	27047333 ~ 27185915 (-)
XLOC_019633	NA	non-coding	downstream	306513	26251376 ~ 26395308 (-)
XLOC_019609	BX510938.1	non-coding	downstream	1323810	25376752 ~ 25378011 (-)
XLOC_019606	NA	non-coding	downstream	1474933	25216390 ~ 25226888 (-)
XLOC_019603	NA	non-coding	downstream	2015606	24679050 ~ 24686215 (-)
XLOC_019649	NA	non-coding	upstream	486170	27188124 ~ 27191434 (-)
XLOC_019658	CR405687.1	non-coding	upstream	856536	27558490 ~ 27566738 (-)
XLOC_019661	AL845282.1	non-coding	upstream	1244320	27946274 ~ 27946391 (-)
XLOC_019662	BX927322.1	non-coding	upstream	1361252	28063206 ~ 28063322 (-)

Expression

Co-expression Network