gabrb3 (LOC107673538)


Basic Information

Item Value
gene id gabrb3
gene name LOC107673538
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1334097 ~ 1398380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608164.2
TATATATTTCCGTTTAGTGAATTGTTGCTAGCTTGCCCCCGAGTCAATATGAATTCTGCTGTTCTACCAATCAGCAAAACGCTCCAACGAGCTCGCAAACTGAAGTATCACGTAACCAGGTCCatttagctgctctgtcatacaGAGAGCCAGTTTCTTCAGACTCCGGACAACCTGGTATGAACCAGTGGTGGTGGTGAGTCTCGTCTAAGGGAGAGGAAAACCTGGCAAACACCTGGTAACAACATGGATAATGTAGGCTAGATGAGTTTTGCGCACTCGGAAACGAATTGGTCTTTAATTCAaccctccccccccaaaaaaccacAGAAGTGACATTTGGACTTCTACATTGCCGTGGGTGTGATAGTCTAATAACCAATGAATGCCACGGCTTGGATAATGGAGGTTTGGATGAGTTCAAACCACGACGGGTCTCGCCGCCGCTACTGGTAACGGTTTAGGCAAAATGTTTGGTGTTCACCTAATGCGCGGTGCTATAACATCTTCCGAAAGATTTCCGACTGATGTGAAACATTTCAACTGATCTAAGATATCGGGAGCTGTTAGGTTAATATCAGAGAGCTGCTGATCAAATATAGCCATAGGTttataacgttttttttttttttacgctgGAAAACCCGTTAAACACCTGTTTAGAGTCGAGACGCGTGATCCTATGTTGGAGAGATCACAAGAAATGTTTGGGTTGCAGAGAAGAGGGGAATTTGACATTCTCTCTGTGTCACTCATAGTGGCGTTGGTGTGCTGTGCGCAGAGCGCCAACGAACCGGGGAATATGTCTTTCGTAAAGGAGACGGTGGACAAACTGTTAAAAGGGTATGATATCCGCCTTCGACCAGACTTCGGAGGCAAACCGGTTTCTGTTGGCATGAGTTTAGATGTGGCAAACATCGACATGGTGTCAGAGGTCAACATGGACTACACGTTGACCATGTACTTCCAGCAGTACTGGAGGGACAAGAGGCTGGCGTACGCTGGGATCCCCCTCAACCTGACCCTGGATAACCGGGTCGCTGACCAGCTCTGGGTCCCCGACACCTACTTCCTCAATGATAAGAAGTCCTTTGTGCATGGGGTCACCGTGAAGAACCGTATGATCCGACTGCATCCGGACGGCACCGTGCTCTACGGACTGAGGATAACAACGACGGCTGCCTGTATGATGGACCTGAGGAGATACCCACTGGACGAACAGAACTGTACTCTGGAGATAGAGAGCTATGGCTACACCACAGATGACATCGAGTTCTACTGGAAAGGGGGGGAGAATGCTGTGACAGGAGTGACTCGCATCGAGCTGCCTCAGTTCTCCATCGTGGACTACAAACTGGTTTCCAGGAATGTGGTCTTTTCCACAGGTGCCTACCCACGTCTGTCTCTGAGCTTCAAGCTAAAGAGGAACATCGGCTACTTCATCCTGCAGACGTACATGCCCTCCATCCTGATCACCATCCTGTCCTGGGTCTCCTTCTGGATCAACTACGACGCCTCCGCTGCCAGAGTGGCTTTAGGTATCACCACGGTGTTGACCTTGACCACCATCAACACCCATCTGAGAGAGACGCTCCCTAAGATCCCCTATGTCAAGGCCATAGACATGTACCTGATGGGCTGCTTCGTGTTCGTCTTCCTGGCTCTGCTGGAGTACGCCTTCGTCAACTACGTCTTCTTCGGACGGGGCCATCGGATGCAGAAGAAGTTGGCAGAGAAGGTCAACAATGACAGGGCGGCCAAGTTCGACGGCAACAGGGTAACGTTTACCCCCTCAGAAATGGTTGACTCTCAGGGCAACATCCTCCTGACAACCCTGGAGATCCACAACGAAGTTGGCGCCGGCAATGAGATCACAACCAGCATCACCGAGACAACTACACGGAACTCCACCTCCATGATATTCAACCAATCAGGCCTCCAGTACCGAAAACCGAGTGCTCTGAGTGGCCGGGAGAGGAACGCCCATGCTCACGTGAAGAAGACACGGCTACGCAGGCGGTCCTCTCAATTCATAATCAAAATCCCCAACCTGACGGACGTTAACTCCATCGATAGATGGTCACGGGTTGTCTTCCCCTTCACCTTTACCCTCTTCAACTTCATCTACTGGCTTTACTACGTGAACTAGTGGTCTTCAagcctctcctcagggacccccagccgTTCATCTACTGGCTTTACTACGTGAACTAGTGGTTCTCAagcctctcctcagggacccccagccgTTAAATTTTAGATCCACTGAACTAAGTAACAGAAGGGATTTTCACTCCTTAAACTTCTCTTGTTTCTCTAAAGAGTAAAGAAACCCATCTGTATTCGGAGGACATATGACTACGCAGTCCATACTGAGTGCAGAgaaacactactacaacactgagTTGTGGGGTCTCTTGAACTGTACGTTCAGACGAGCAGAGACAGACGCTTTGTGGAAATACTATCCTTCTGAACACTCCTCTGTACAAACAAGAGGGGGACACAGTAAATGGTATGGGGTTTTCAGAAGCGTTATTTACTTTGATTTATGCCAATTATTGTGACTCTACCCCCTTATTTTAGTGTGAGAAATTCATTGAGCTAAATTAATTCAGTATGCTATTTATCATAGTAGCCCATTATAAACTGAATGAGAAATGAATTCAGTGTGCTATTTATCATAGCCCGTTATAAACTGAATGAGAAATTAATTCAGTGTGCTATTTATCATAGTAGCCCATTATAAACTGAATGAGAAATTAATTCAGTGTGCTATTTATCATAGTAGACATTATAAACTGAATGAGAAATTAATTCAGTGTGCTATTTATCATAGTAGCCCATTATAAACTGAATGAGAAATTAATTCAGTGTGCTATTTATCATAGTAGCCCGTTATAAACTGAATGTGAAATTAATTCAGTGTGCTATTTATCATAATAGCCCGTTATAAACTGAATGAGAAATTAATTCAGTGTGCTATTTATCATAATAGCCCGTTATAAACTGAATGAGAAATTCATTCAGTATGCTATTTATCATAGTAGGCCATTATAAACTGAATGAGAAATTAAATGCACAGCCTTTGAGTCAGGATATGTCTGGTTTATCTGTTGGGATATTACCATTCCAGTCATGTCTATGTTCTATGGACTGTCAGCACAGGATCATATGTAATGTATAGGGTTGCATATGAGCTGAATATTATAGTCATGAATAGTCATTAACagtcatgaataaccatgaataGTCATTAACagtcatgaataaccatgaataGTCATGTACTGAATCACTTTTGGATACTAATTCCATTGGCTTGGGTCTGACTATTCTGCAAACGatttacttaaaaaatatatatataagtgCTAAAGTAACCTCTATGTTATCTTGATCTATATTTCACTGTACATTGGAGGCAACGTAATGTCAACTCTGCTCTCACCAACCCACACCTCAGTATCACTGTAGTTCATAGGTCACGCCTAACATCCACACTGCCAAGATAAGCATGTCATGGAACCTGAATCATCCATTTTTATTCATTAAACCAGACTTACTTTTATTCATTTTACAATAATCAATGTAAGTCATTTACCTTCCCTGAGTGAAATTATGTTTTCTGATCACAAGAAAACGTGTGTTCCGATCTGCTGTCATGCAATGCTCAATCAAGGCTTTGATGTGGGCCTTACATGTGTTGGCAATACAGTAGGCTCTGACCTTCGTCTGACCTAAACTGTACCCATATCTTTATGAATAGCCTAATGAATTTTGAATTATGTTATTTTTTACAATGTACATACATACCGTAGCCATAGAAAACACAACTCAGGTTCTGAATGGAGAGGTTCCTTATCACAATACACATGATCTATTGTCTGATTGTGTTATTACACAGTATTCCTATACATTTCCCTATGATTGGTTTATAATGTAGCCATACTATATACTACACATGACTACTGCTTTATAATTTCTCAGTGAAGTATCCTGTCCTTTAAGATCTCAGAGAACTGACACTAGGGGTTCTGCTCATACACACTACAACAACATCCCCCTGGTCCAAGACAGACATCGCACATTAGAGgctctgtatagggaatagggtgctgtttgagaTGCAGACTTTACACTAGACCACCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGACCCCCCTACAGAGTCTCTACCACCCTACAGAGAGTCTAGACCCCCCTACAGAGTCTCTACCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGACCCCCTACAGAGAGTCTAGACCCCACTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCAACCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACTCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACTCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACCCCCCTTCCATAGAGTCTAGACCCCCCCTATGGAGAGTCTAGACCCCCCTTCCATAGAGTCTAGACCCCCCTTCCATAGAGTCTAGACCCCCCTAAAGACTCTAGACCCCGAAACAGAGAGTCTAGACCACCCTACAGTCCATACCCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACCCCCTACAGACAGTCTCATTTTGAGTGTGATTCCATATTTAGGCTAGTTGAGCTGGGAGCATTGAGCATGATTGCAGAGAGTAAGCATGCCATAGAACCCTAATCATCTGTTTTTATCCATAACAGAGACTTACCTTCATTCATTTCACATAATCTTAATCATTAACTTCCCTGAGTGAGTAGGACATGAAAACACTTTTAAATTAAACTTAgtgtttaaaaaaacattatgAAACATGCATACAAATGGTTATTTTGTCAATAGTACAACAATTTGAATAAAGA

Function

NR:

description
gamma-aminobutyric acid receptor subunit beta-3-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05181 GABRB; gamma-aminobutyric acid receptor subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608164.2 True 5370 mRNA 0.45 9 1334097 1398380

Neighbor

gene id symbol gene type direction distance location
LOC118964682 NA coding upstream 5831 1327322 ~ 1328266 (+)
cyfip1 LOC106590724 coding upstream 33473 1173711 ~ 1300624 (+)
tubgcp5 tubgcp5 coding upstream 200189 1089396 ~ 1133908 (+)
slc9a7 slc9a7 coding upstream 361988 781840 ~ 1244153 (+)
nit2 nit2 coding upstream 716502 602103 ~ 617595 (+)
atp10a atp10a coding downstream 61687 1460067 ~ 1596619 (+)
LOC110520782 LOC106574119 coding downstream 334409 1732789 ~ 1770434 (+)
tmem131 LOC102783117 coding downstream 460997 1859377 ~ 1967576 (+)
nme7 at233 coding downstream 585946 1984326 ~ 2101039 (+)
dpt LOC106574207 coding downstream 778292 2176672 ~ 2192895 (+)
G649 NA non-coding upstream 18444 1315407 ~ 1315653 (+)
G683 NA non-coding upstream 24549 1308768 ~ 1309548 (+)
G678 NA non-coding upstream 65737 1267352 ~ 1268360 (+)
G679 NA non-coding upstream 66016 1267396 ~ 1268081 (+)
G674 NA non-coding upstream 79350 1253014 ~ 1254747 (+)
G740 NA non-coding downstream 89188 1487568 ~ 1488987 (+)
G745 NA non-coding downstream 97193 1495573 ~ 1496694 (+)
G767 NA non-coding downstream 157882 1556262 ~ 1556636 (+)
G768 NA non-coding downstream 159011 1557391 ~ 1558371 (+)
G771 NA non-coding downstream 168245 1566625 ~ 1567020 (+)
G583 NA other upstream 323890 1003783 ~ 1010207 (+)
G166 NA other upstream 1014123 318047 ~ 319974 (+)
G51 NA other upstream 1203834 120466 ~ 130263 (+)
G50 NA other upstream 1213790 112959 ~ 120307 (+)
G26 NA other upstream 1240379 56555 ~ 93718 (+)
G961 NA other downstream 680518 2078898 ~ 2079603 (+)
G998 LOC106576565 other downstream 860503 2258883 ~ 2305334 (+)
G2016 NA other downstream 1245955 2644335 ~ 2645169 (+)
G2343 NA other downstream 1816317 3214697 ~ 3216234 (+)
G2464 NA other downstream 2104889 3503269 ~ 3503581 (+)

Expression


Co-expression Network