LOC110531937 (LOC106574099)


Basic Information

Item Value
gene id LOC110531937
gene name LOC106574099
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2538334 ~ 2580308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615461.2
AACAGGTCTGACTGGGGTTGACAGTGATTGAACAGCAGCAGTGAAGCGTTTCATCTGTGGTCATTTGATCCAGGAGCTGCAGGAGGCCTAGCGTTTCTTACTGTGTTTCATGGGACCAGAGAAGCTGCAGAACTCTGCAGTGGTATTTGAGTTGACCGGCTGTGCGCAGGAGGACTGAGTCCGGAGTCCATCTTAAACCCAGATCATTGACGTAACCAACCCTCTGACAGGGTCATGGTGTACCTGGCCCACACGGTTCACTGGCAGTTCCTGGGCCTAGTGATTGGCTGTGTAGGCTGGATCCTGACCATGGCCACCGCGGGCCACAACGAGTGGAGGCTGTGGTACGTAGAGGACGTCTCCGTGGTAACCTCTGGCGTGGCCTGGGTGGGCGTGTGGCGGGCGTGTTTCTATAGCCACACTCTACCCGACTCAGAGTTctgccagccaatcagcattgccGACCTGTTTGTTCCCGTGGAGATCTCCGTGGCACAGGTGGTCATCATGGTAGCAGTGATAACTGGACTCTTGGGAAACATCCTTGGTGCGTACGCAGTGAGGAACATCTATTTTGGTCAGAAGACTCATGACTTTATCAGACTGACGTTCTCAGGGGCCGGGGGGCTGTACGTCCTGACAGGGGTCAGCTTTCTGGTCCCTCTAGTCTGGAACGTGAAATCTGTCCTGACTAATCAGACTGTAGCATTCCCCCCAGAGTTCCACCTCCCTCCTGCCCCCCTCAGACAGGAAGTGGGCGGAGCTATCTGGATGGGGGTCGGTGCTTCGATCTTCCTTATCTTTGGCGGTCTCCTATTCCTCTGCTACAGGTATGTTATCAGGGCTAAGCCAGTCAGTGGAGAGAACGACAAGGACCCTCTACATGGGCCACCGATAAGACTAAAGTCTATATTAGAGAATGGAGACAAGGAGACCAGAGACAACCCTGCCTTCCAGGCTGATGAAGACTTTTAGGGCAGAGGGCAGACAAACAGGCACTTGTAAACTCCCTGTTGTGGATTTAAAAGCATAGAATTGTTTTAAGCATTGGCTGGAGAGTTTCTGCCATTGTTTAATACATGCAAGAAAGTGTGGAAGTACACACTTTGGGAGAAGGGTGGGGAATCTGAATTCAACCATAAAACACTGGAAAACAGAACCATAGAACCCCTTCTCTCTGTGAAATTATCAGTTTAGCATGATTGAAGTTTAGAGTACAGCTTTGACAAGTGCATAGACGCAGTGATCTATATTTTGGTCTCTGATAAATGTGACTAATGAAAACTGCAATTGTTTTGATTGTATATATTTGCAACCAAATTTATTTGAAATGTTGTAACTGTAATTTTGTAGTGATCATGCTTGAACTGTTGTTCTCGAGGCACCATTGCAAATGAGACCCTAAACTCAATGGATTCCGCAGTTAAACAAAGGCTAATAATAAAATCAAATTAACATGACAAAGTTCATGAAATCCTTGGAATGTCATCATGtgtaaaataactttttttgaAATGTAAGTGAAAAGAATGTGGCAgctgtactgtagggttactgCATATAATTTCAtaaatagatttttatattgAAATCACTTCCTGCTATGTTGCTCCTGTTGTTGGACCCCTGCCGTGAATGAAATTAACTTTACAGCACCTCTCAGTGTGGTGCCAAAACTTCATACCCAGCTCTCTGGGGCTGCGTCTCTattccctatggcaccctattcccaatatagtgcacaacatttgaccagagctctatgtaaaaagtagtgcactataaagtgatTAGTGTGGAATTTGAGGCACACAGTGATACTCCTTTATACTGCAGCAGTCAAATTGTAATCTGAGAATGGAATACTGGTTGTGACAAATCTCAGTGGGAGTTAGTTATGTGATTCTTCTTAAAAAATGAGTTAATCCAGAGAAATTAATTTTTTAATTAGATTAGATTTTATTTCTCAGCTGGAGTTTAGGTATTCTGAATTAACTTAGTCCAAGgagggctctctctctcaatttcaatttaatgggctttattggcttggctatgtttacatt

Function

NR:

description
claudin-34-like

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615461.2 True 2066 mRNA 0.45 2 2538334 2580308

Neighbor

gene id symbol gene type direction distance location
zbtb11 LOC106560622 coding upstream 280009 2212135 ~ 2258325 (+)
dpt LOC106574207 coding upstream 345439 2176672 ~ 2192895 (+)
nme7 at233 coding upstream 439650 1984326 ~ 2101039 (+)
tmem131 LOC102783117 coding upstream 570758 1859377 ~ 1967576 (+)
LOC110520782 LOC106574119 coding upstream 767900 1732789 ~ 1770434 (+)
LOC118966170 NA coding downstream 819118 3399426 ~ 3400148 (+)
bcl6aa LOC106574104 coding downstream 1022355 3602663 ~ 3624582 (+)
LOC118965227 NA coding downstream 1242828 3822517 ~ 3826226 (+)
trnap-cgg NA coding downstream 1267315 3847623 ~ 3847694 (+)
trnap-ugg NA coding downstream 1267580 3847888 ~ 3847959 (+)
G1961 NA non-coding upstream 580 2537525 ~ 2537754 (+)
G1959 NA non-coding upstream 1290 2536747 ~ 2537044 (+)
G1958 NA non-coding upstream 1873 2536145 ~ 2536461 (+)
G1957 NA non-coding upstream 2539 2535583 ~ 2535795 (+)
G1936 NA non-coding upstream 4667 2456072 ~ 2533667 (+)
G2004 LOC106574222 non-coding downstream 36261 2616569 ~ 2618562 (+)
G2018 NA non-coding downstream 67719 2648027 ~ 2656615 (+)
G2084 NA non-coding downstream 202459 2782767 ~ 2784184 (+)
G2068 NA non-coding downstream 206510 2786818 ~ 2798145 (+)
G2223 NA non-coding downstream 235982 2816290 ~ 2816626 (+)
G998 LOC106576565 other upstream 274769 2258883 ~ 2305334 (+)
G961 NA other upstream 458731 2078898 ~ 2079603 (+)
G583 NA other upstream 1528127 1003783 ~ 1010207 (+)
G166 NA other upstream 2218360 318047 ~ 319974 (+)
G51 NA other upstream 2408071 120466 ~ 130263 (+)
G2016 NA other downstream 64027 2644335 ~ 2645169 (+)
G2343 NA other downstream 634389 3214697 ~ 3216234 (+)
G2464 NA other downstream 922961 3503269 ~ 3503581 (+)
G3176 NA other downstream 1595015 4175323 ~ 4178073 (+)
G3234 NA other downstream 1818596 4398904 ~ 4399444 (+)

Expression


Co-expression Network