im:7152348 (LOC106573986)


Basic Information

Item Value
gene id im:7152348
gene name LOC106573986
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3848517 ~ 3853009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616297.2
tcacccctcctcccctccggGCTGCTAGTAAACCttcacacaggcaggcaggcagcaggcaggccaTCCCCTGGCTGCCACAGCTGCTGTGCCGGTTGGGCCTGCCCTTAGAAAAGAGACAACCCAAAACTGCCccctcaacacacagacacactgaaaaGGAGGCAGGCAGTAgagtctgtctttctgtttctatctctctatcataTAACAACTACAGGACCATCACTTTAACCTTCTGGAATATTCCTTCATATTTAAGTagagaggaCCCGAGAAGAACTGTATAACAAAATAAACAAACCTGGACACAATAATCATTAGCCCAACTTCTGCCGGCCCAGCAGTACCTCCATCTCCCCAGcgactcctcttcctctcacacagacagacagacagacagacagacagacagacagacagacagacatacccatCCAGCCAGGTAATCTGTGTCTTCTCCCCACCTGGTTTAAGTGCCGGCCTAGTTAGGTGTCCAGTATCTAGTTAGGTGTCCAGTATCTAGTTAGGTGTCCCTTATCTAGTTAGGTGTCCAGTATCTAGTTAGATTTCCAGTATCTCTTGGTCCAGCCCTGCTACCCAGTGCTCCAGTCTCTGCAGCCTATACCCGGGCCCCTCCAGACCAGGCTTTCTCAGGTCCAGGTATCCTTGCCAGGCCTACCGCCTAACCACCGACAGATAAGCCTTCGTGGCCTCCATTCCTCCAGCCAGGTAGGCCCGCCAACCCCAGTACTCCAGTCTTGCTGCTCCACCCAGGCTCTTCCAGTCCAGGTCCAGCTATCGCTGTCCGGCCCGACCATGGTTCTGTGTGAGGACAGGGAGTGTGGGGTGTGTTATCAGCCCTACTCCCGTCAGGATCGGATCCCCCGGGTGCTCCACTGTAGACACACCTTCTGTGCCACCTGCTTAGAGACCATGTCCCAGCCCAAGAGTGACATGGTCACCGTGTGCTGCCCGCTGTGCCGCCAGACCACCTGTGTAGGGCGCGGCCTCAGCCTTCAGGAGGCGCTGTGGGTCAACTCACGCCTCTGGGAATACATACCTGAGAgcaaagaagaggaggaggaggtgaaggaagaagaggaggaggaggaggtgaaggaagaagaggaggaggagagagtggaggctgacagacagacacaggcctCCTCACAGGCAGAATGCCCTACGTCGAAGCGCTCTAGAAAAATGCTGAAATTTCCGGCCTTCCTCAGGAAATTCAGTCTGACAAAACCACAGCATCAAGAGAGTCTCGTGCCTGGTTGTGGCAACGTGGAGATGAAATCCTGGCGCAGGCTTCCAACCGCTGACACTTTTTAGGTCTCTCACGCGCTCGACGCAGGGATGTACGTGTACTGTATAAACAGTGGAGTGTTTACAGTTTCTCTCTGATATAATAATCTGCATCTTTTGAACAATGACGTGTAGATTACCAGTTGACACCCACAGTCAACGGGCAACACTGTTAAAGAACAGCTCAGAGACAGTTGGGTCTGTATCCAatatggcaccctagtccctacaggctctggttaaaagtagtgcactatatagggaatagggttccatagggctctggtctaaagtagtgcactatatagggaatagggctctggttaaaagtagtgcactatatagggaatagggtggcgttTGGGACATACGTTTGGAGAAGCCAGTACGCGTCCATGTGTGTATTGACTCTGACAAGATAGCCTTCATTGTTGAGAAGCAGTGAAACCGCCCCCAGTCGTCCTGTCTTCTTCCCCATTGGTTATTTTAGCCTTAATTCCCCACAGCTGGTGCAGTGGGATTTGGTTCAGCTGTCTCTAGGACAGACGTCCCAGTGGAAGCCAGGGTACCCCCTCCAACCACTCcctcctgctgcccccccccccccctcctcttaaCAGATGGCCTCCTGAGGAtgaccccccccctccaccctcctccttccccaGTGTCTGCAAACAGAGCGTTTAATTTATTATCAGCTTTTGCATTCACgtcaatttttttaaatatattatctttaataaataaataaaaagttgaTTTGAAAATA

Function

NR:

description
E3 ubiquitin-protein ligase RNF169-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616297.2 True 2089 mRNA 0.52 4 3848517 3853009

Neighbor

gene id symbol gene type direction distance location
trnap-ugg NA coding upstream 558 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 823 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 22652 3822517 ~ 3826226 (+)
bcl6aa LOC106574104 coding upstream 223935 3602663 ~ 3624582 (+)
LOC118966170 NA coding upstream 448369 3399426 ~ 3400148 (+)
agxta LOC105025628 coding downstream 1095718 4948727 ~ 4957086 (+)
LOC110526525 LOC106613452 coding downstream 1811162 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 2706058 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 2831090 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 3175541 7028550 ~ 7056518 (+)
G2585 NA non-coding upstream 34312 3813916 ~ 3814205 (+)
G2570 NA non-coding upstream 67839 3780289 ~ 3780678 (+)
G2559 NA non-coding upstream 83920 3756223 ~ 3764597 (+)
G2426 NA non-coding upstream 176015 3650116 ~ 3672502 (+)
G2958 NA non-coding downstream 11992 3865001 ~ 3865275 (+)
G2963 NA non-coding downstream 14725 3867734 ~ 3871079 (+)
G2971 NA non-coding downstream 27886 3880895 ~ 3881979 (+)
G2978 NA non-coding downstream 41082 3894091 ~ 3894468 (+)
G2979 NA non-coding downstream 43579 3896588 ~ 3906272 (+)
G2464 NA other upstream 344936 3503269 ~ 3503581 (+)
G2343 NA other upstream 632283 3214697 ~ 3216234 (+)
G2016 NA other upstream 1203348 2644335 ~ 2645169 (+)
G998 LOC106576565 other upstream 1584952 2258883 ~ 2305334 (+)
G961 NA other upstream 1768914 2078898 ~ 2079603 (+)
G3176 NA other downstream 322314 4175323 ~ 4178073 (+)
G3234 NA other downstream 545895 4398904 ~ 4399444 (+)
G3351 NA other downstream 586957 4439966 ~ 4441908 (+)
G3596 NA other downstream 1001512 4854521 ~ 4856248 (+)
G3597 NA other downstream 1003516 4856525 ~ 4857065 (+)

Expression


Co-expression Network