agxta (LOC105025628)


Basic Information

Item Value
gene id agxta
gene name LOC105025628
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4948727 ~ 4957086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983882.1
ACTGAGTAACCACTGACCAAACAGACACGTTGGAGTGATCAAGGAAACCACATCAGCTCACCACAAAACACCATaaaaacaggtgagaggtgtgtgtctgtcaggCTGCTTACAGAGTCAAGAGTCCAGACCCGTGCAATTGTATCATATCCACACTGCCAACAAACCCAGCTAGAGCCATGTCGTCCATCACCGTCCCGCCACCTAAATGTCTCCAGAAAACCTTCGTGGCTCCGCGGAGACACATGTTTGGGCCCGGACCGTCCAATGTTCCTCCCCGCATCTTAGCGGCAGGGGCCGAGCCCATCATCGGTCACATGCATCCAGAAATGCTCGAGATCATGAGTGACATCAAGAGTGGGATCCAATACGCCTTCCAGACTCAGAACAACATGACAATAGCAGTGAGTGGCACAGGACACACGGCCATGGAGTGTGCCATCTTCAACGCCGTAGAGCCAGGGGAAGGGGTTCTCACCGCGGTCAATGGGATCTGGGGAGAACGGGCAGCGGAGATGGCAGAGAGGATAGGTGCCAGAGTTAATTCCATCGTGACAACTGCAGGGGGGTATTTCACCAGTGAAGAGATTGATCGGGCCCTGGCCAAACACAAGCCTGTGCTGTTCTTCCTAACCCACGGAGAATCCTCCACAGGAGTAGTCCATCCACTAGATGGCATTGGAGACATATGTCACAAGCACAACTGTCTGTTTCTCGTTGACTGTGTGGCTTCAATGGGAGGTGCCCCACTTCACATGGACAAACAAGGTATCGACATCCTGTACTCTGGCTCACAGAAGGTTCTAAATGCTCCACCTGGGACCGCTCCCATTTCCTTCAGTGAAAGAGCTTGTCAGAAAGTATTCAATCGGAAAACAAAGCCAGTGTCGTTCTTCCTGGACATGACCTGGCTGGCAAACTACTGGGGTTGTGACGGCAAACCTGCTAGAATATACCACCACACTGCGCCTGTGTCTGCCTTCTACTCTCTCCGGGAGAGTCTGGCTATCCTCGCTGAACAGGGTCTGGAGAACTCCTGGCAAAGACACAAGGAAGTAGCAGAATACTTCCATGAAGGCCTGGAGAACATGGGCCTCAAACTGTTTGTGAAAGACAAGAACGCCAGGTTGCCCACGGTCACCACTATAGTATCACCCCCTGGATATGACTGGAAGGAGATCACCAGCTACATCATGAAGAATCACAACCTAGAAATCTCTGGAGGACTGGGACCATCCGTTGGCCAGGTGCTGCGTGTGGGACTGATGGGGGGTAACAGCAGCAAGGCCAGTGTCGACATGGTGCTGGAAGCCCTGAGAGATGCTCTCAGATACTGTCACAAAAGCAAAGTATAACATGGCTCAAACGCTTCCATAATAGCAAGGTCAAAGTCTGGATCAACATTGTAAACATTGTCTCATTGTCTCTGGCAAGGTCAAACATGGCTAAAACGCTGCCATGAGAACAAAATTATAACATGGCTGTCTGGAAGTCAGTTTAAAGTCAGCTTTGATATCAGGGAAGAACAATTAATGGAATGTAAACTTCTAATATGTTGAATAATAAAATTGTTTGTTACCTCTGATTCAAGTGTTTTGTAaacttcaaatcaaatacatGTTATGTGATTGTGTGTTTTCCTTTCGTTTGAATAAAAAACAAAGCAATGTTCTCAATGCTTTCAATGTTTGAATA
>XM_036983911.1
CATGTTTGGGCCCGGACCGTCCAATGTTCCTCCCCGCATCTTAGCGGCAGGGGCCGAGCCCATCATCGGTCACATGCATCCAGAAATGCTCGAGGTATGTCTACAAAGTTTGGTGATGAGCAATCAATCTCAATGAAAGATCATGAGTGACATCAAGAGTGGGATCCAATACGCCTTCCAGACTCAGAACAACATGACAATAGCAGTGAGTGGCACAGGACACACGGCCATGGAGTGTGCCATCTTCAACGCCGTAGAGCCAGGGGAAGGGGTTCTCACCGCGGTCAATGGGATCTGGGGAGAACGGGCAGCGGAGATGGCAGAGAGGATAGGTGCCAGAGTTAATTCCATCGTGACAACTGCAGGGGGGTATTTCACCAGTGAAGAGATTGATCGGGCCCTGGCCAAACACAAGCCTGTGCTGTTCTTCCTAACCCACGGAGAATCCTCCACAGGAGTAGTCCATCCACTAGATGGCATTGGAGACATATGTCACAAGCACAACTGTCTGTTTCTCGTTGACTGTGTGGCTTCAATGGGAGGTGCCCCACTTCACATGGACAAACAAGGTATCGACATCCTGTACTCTGGCTCACAGAAGGTTCTAAATGCTCCACCTGGGACCGCTCCCATTTCCTTCAGTGAAAGAGCTTGTCAGAAAGTATTCAATCGGAAAACAAAGCCAGTGTCGTTCTTCCTGGACATGACCTGGCTGGCAAACTACTGGGGTTGTGACGGCAAACCTGCTAGAATATACCACCACACTGCGCCTGTGTCTGCCTTCTACTCTCTCCGGGAGAGTCTGGCTATCCTCGCTGAACAGGGTCTGGAGAACTCCTGGCAAAGACACAAGGAAGTAGCAGAATACTTCCATGAAGGCCTGGAGAACATGGGCCTCAAACTGTTTGTGAAAGACAAGAACGCCAGGTTGCCCACGGTCACCACTATAGTATCACCCCCTGGATATGACTGGAAGGAGATCACCAGCTACATCATGAAGAATCACAACCTAGAAATCTCTGGAGGACTGGGACCATCCGTTGGCCAGGTGCTGCGTGTGGGACTGATGGGGGGTAACAGCAGCAAGGCCAGTGTCGACATGGTGCTGGAAGCCCTGAGAGATGCTCTCAGATACTGTCACAAAAGCAAAGTATAACATGGCTCAAACGCTTCCATAATAGCAAGGTCAAAGTCTGGATCAACATTGTAAACATTGTCTCATTGTCTCTGGCAAGGTCAAACATGGCTAAAACGCTGCCATGAGAACAAAATTATAACATGGCTGTCTGGAAGTCAGTTTAAAGTCAGCTTTGATATCAGGGAAGAACAATTAATGGAATGTAAACTTCTAATATGTTGAATAATAAAATTGTTTGTTACCTCTGATTCAAGTGTTTTGTAaacttcaaatcaaatacatGTTATGTGATTGTGTGTTTTCCTTTCGTTTGAATAAAAAACAAAGCAATGTTCTCAATGCTTTCAATGTTTGAATA

Function

NR:

description
serine--pyruvate aminotransferase, mitochondrial-like

GO: NA

KEGG:

id description
K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983882.1 False 1695 mRNA 0.48 12 4948727 4957086
XM_036983911.1 True 1496 mRNA 0.48 11 4949391 4957086

Neighbor

gene id symbol gene type direction distance location
im:7152348 LOC106573986 coding upstream 1095718 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 1100768 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 1101033 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 1122862 3822517 ~ 3826226 (+)
bcl6aa LOC106574104 coding upstream 1324145 3602663 ~ 3624582 (+)
LOC110526525 LOC106613452 coding downstream 707085 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 1601981 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 1727013 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 2071464 7028550 ~ 7056518 (+)
alpi.2 LOC106574193 coding downstream 2107282 7064368 ~ 7094220 (+)
G3639 NA non-coding upstream 4880 4942465 ~ 4943847 (+)
G3617 NA non-coding upstream 38164 4909131 ~ 4910563 (+)
G3605 NA non-coding upstream 64372 4883994 ~ 4884355 (+)
G3601 LOC106573836 non-coding upstream 76785 4869971 ~ 4871942 (+)
G3580 NA non-coding upstream 120461 4827940 ~ 4828266 (+)
G3695 NA non-coding downstream 127681 5084767 ~ 5085108 (+)
G3725 NA non-coding downstream 182043 5139129 ~ 5140516 (+)
G3964 NA non-coding downstream 228353 5185439 ~ 5185821 (+)
G3972 NA non-coding downstream 233344 5190430 ~ 5190635 (+)
G4025 NA non-coding downstream 287729 5244815 ~ 5245184 (+)
G3597 NA other upstream 91662 4856525 ~ 4857065 (+)
G3596 NA other upstream 92479 4854521 ~ 4856248 (+)
G3351 NA other upstream 506819 4439966 ~ 4441908 (+)
G3234 NA other upstream 549283 4398904 ~ 4399444 (+)
G3176 NA other upstream 770654 4175323 ~ 4178073 (+)
G5276 NA other downstream 1560396 6517482 ~ 6518189 (+)
G5581 NA other downstream 1853908 6810994 ~ 6811621 (+)
G6434 NA other downstream 2767960 7725046 ~ 7725609 (+)
G6518 NA other downstream 2928305 7885391 ~ 7885907 (+)
G6807 NA other downstream 3079531 8036617 ~ 8037154 (+)

Expression


Co-expression Network