alpi.2 (LOC106574193)


Basic Information

Item Value
gene id alpi.2
gene name LOC106574193
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7064368 ~ 7094220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610103.2
ACAGTGCTTCAACCTTCCTAACTTTGTTCAGATGTCCTAATGTCATTACTAAGCACATAGCACACACATCATGGCTAGTCAACATACCCTCATTGGATTAATCCTATTTCTATCGGTGGATTGGACTTCATCTGTCATCCCAGAGAATGAGAAGCATCCCAGCTACTGGAACAACAAGGGGAAGCAGGCCCTCCACAAAGCTCTGGATATGAAGCCAAACGTCCGTCGGGCTAAGAACTCTATTCTGTTCCTGGGAGATGGTATGggcatccccacagtgactgcagcGAGGATCCTCAAAGGGCAGATGAATGGAGGGAACGGAGAGGAGTTTAGTCTGGCAATGGACACCTTCCCACACTTAGCCCTGTCTAAGACGTACAACGTGGACCAGCAGATGCCTGACAGTGCCGGCACGGCCACTGCCTACCTGTGTGGTGTGAAGGCCAACTATGGAACCCTGGGTCTCAGTGCCTCAGCTCTCCGCTACAACTGCAACAGCACCTTCGGAAACGAGGTGGAATCTGTCCTTCACCGCGCCAAGATGGCAGGGAAGTCGGTGGGCATCGTCTCCACCGCCCGTGTGCAGCATGCCTCTCCTGGAGCCGCCTACTCCCACACAGCCAACAGAGGATGGTACGCCGACTCTGACATGAACACTGCAGACATCACAGCAGGATGCCGTGACATCGCCTACCAGCTGGTCCACAACACTGACATCAATGTCATTCTTGGTGGAGGACGAAAATATATGTTTTCCAAGGAAACACCGGACCCAGAGTATCCATCATACAAAGGAGTCCGTAACGACAAGATTGACCTCACCGCAGTGTGGCTCAATAACAAACAGAATGCAAAGTATGTGTGGAACAAAGATGAATTTGACAAAGTGAATCCGGAAAAAACAGACTACCTGATGGGTCTGTTTGAGCCAAGTGACTGCCGCTATGAGCTAGAGCGTGACCATACCTTGGACCCTTCCCTCACTGAGATGGTGGACAAAGCCATCAAGATCCTCCGCAGGAACCCCAAAGGATACTACCTCTTTGTGGAAGGGGGGAGAATTGATCACGGTCACCATGGCAGCGGGGCCAAATTTGCCCTGACGGAGGCGGTGGAGTTTGACAATGCCATCGAGCGGGCGGCAGAACTGACCAGTGAGCTGGACACTCTGTCTGTGGTCACTGCTGACCACTCCCACGTCTTCTCCTTTGGAGGGCACTCCAACAGAGGGAACCCCGTCTTAGGTCTGTCCCGTAACTTGGCTGACGATAAAAAGAGCTTTACCACCACACTCTATGGAAACGGACCAGGATACAAGTTAGTCAATGGATCTCGTGCAGATGTCAACACAACGGAAGCAGATCACAAAGATTACAAGCAGCAGTCAGCCGTGCCTCTGGACTCTGAGACCCACGGCTCAGAGGACGTGGCCATCTTTGCCAAGGGCCCCATGGCTCACCTCTTTCACGGGGTCCAGGAGCAGAGCTACATCGCCCACGTCATGGCCTACGCAGCATGCATTGAGCCCTACACAGACTGCTTCATCCCAGACCTAGAGCCAGAGCCTAGCCACACAGGAGCCACCAACCCCAGCCTCATAGTGCTGCTGATGGGCCTCATacctgccctcctctccctcttcgcTGTCTGATGGGCACTCTTCTCCCTCTGATGGGCCTCATACCTGCCCTCCTCTCCGTTATATCTGTCTGATTTTGGAAACATTTAGAGACCCAGCTATGATTAATCTACTGAGATTTAGCCGATATTCCACCACACagacattttaca
>XM_021610191.2
ACAGTGCTTCAACCTTCCTAACTTTGTTCAGATGTCCTAATGTCATTACTAAGCACATAGCACACACATCATGGCTAGTCAACATACCCTCATTGGATTAATCCTATTTCTATCGGTGGATTGGACTTCATCTGTCATCCCAGAGAATGAGAAGCATCCCAGCTACTGGAACAACAAGGGGAAGCAGGCCCTCCACAAAGCTCTGGATATGAAGCCAAACGTCCGTCGGGCTAAGAACTCTATTCTGTTCCTGGGAGATGGTATGggcatccccacagtgactgcagcGAGGATCCTCAAAGGGCAGATGAATGGAGGGAACGGAGAGGAGTTTAGTCTGGCAATGGACACCTTCCCACACTTAGCCCTGTCTAAGACGTACAACGTGGACCAGCAGATGCCTGACAGTGCCGGCACGGCCACTGCCTACCTGTGTGGTGTGAAGGCCAACTATGGAACCCTGGGTCTCAGTGCCTCAGCTCTCCGCTACAACTGCAACAGCACCTTCGGAAACGAGGTGGAATCTGTCCTTCACCGCGCCAAGATGGCAGGGAAGTCGGTGGGCATCGTCTCCACCGCCCGTGTGCAGCATGCCTCTCCTGGAGCCGCCTACTCCCACACAGCCAACAGAGGATGGTACGCCGACTCTGACATGAACACTGCAGACATCACAGCAGGATGCCGTGACATCGCCTACCAGCTGGTCCACAACACTGACATCAATGTCATTCTTGGTGGAGGACGAAAATATATGTTTTCCAAGGAAACACCGGACCCAGAGTATCCATCATACAAAGGAGTCCGTAACGACAAGATTGACCTCACCGCAGTGTGGCTCAATAACAAACAGAATGCAAAGTATGTGTGGAACAAAGATGAATTTGACAAAGTGAATCCGGAAAAAACAGACTACCTGATGGGTCTGTTTGAGCCAAGTGACTGCCGCTATGAGCTAGAGCGTGACCATACCTTGGACCCTTCCCTCACTGAGATGGTGGACAAAGCCATCAAGATCCTCCGCAGGAACCCCAAAGGATACTACCTCTTTGTGGAAGGGGGGAGAATTGATCACGGTCACCATGGCAGCGGGGCCAAATTTGCCCTGACGGAGGCGGTGGAGTTTGACAATGCCATCGAGCGGGCGGCAGAACTGACCAGTGAGCTGGACACTCTGTCTGTGGTCACTGCTGACCACTCCCACGTCTTCTCCTTTGGAGGGCACTCCAACAGAGGGAACCCCGTCTTAGGTCTGTCCCGTAACTTGGCTGACGATAAAAAGAGCTTTACCACCACACTCTATGGAAACGGACCAGGATACAAGTTAGTCAATGGATCTCGTGCAGATGTCAACACAACGGAAGCAGATCACAAAGATTACAAGCAGCAGTCAGCCGTGCCTCTGGACTCTGAGACCCACGGCTCAGAGGACGTGGCCATCTTTGCCAAGGGCCCCATGGCTCACCTCTTTCACGGGGTCCAGGAGCAGAGCTACATCGCCCACGTCATGGCCTACGCAGCATGCATTGAGCCCTACACAGACTGCTTCATCCCAGACCTAGAGCCAGAGCCTAGCCACACAGGAGCCACCAACCCCAGCCTCATAGTGCTGCTGATGGGCCTCATacctGCACTCTTCTCCCTCTGATGGGCCTCATACCTGCCCTCCTCTCCGTTATATCTGTCTGATTTTGGAAACATTTAGAGACCCAGCTATGATTAATCTACTGAGATTTAGCCGATATTCCACCACACagacattttacatttgagtcatttagcagattttCTTACAGGAGTGACTACATCCATCTTTGTACTGGTCCCCCCCCCCATGGggaaatcgaacccacaaccctggcgttgcaagcgtcacgctctaccaactgacctACACGGGACCAATAGCAACCCTCGGATAGCTCTTCTGTCCTGCAATATTGATATACCTTATTTGTTGGCATTGCTAATGTTCAATTAAGATATGGGTAATCATGTTCAAcccatgtttgtttgttataAAGGGATGGATAGTAATGTTTGTTATTTAGGAAAGGGGTATGGATAGTAATGTTTGTTATTTAGGAAAGGGGTATGGATAGTAATGTTTGTTATTTAGGAAAGGGAATGGGGGATGGATAGTAATGTTTGTTATTTAGGAAAGGGAATGGGGTATGGATAGTAATGTTTGTTATTTAGGAATGGGGTATGGATAGTAATGTTTGTTATTTAGGAAATGGAAAGGGTTATGGATAGTAATGGCGTTGTGTAAACTGAGCTGATCTACTGTATAATCTCCATTGACACTCCATAAAACTTATCCAAATGTACTTGCGATTAGTCTAATTCATTTCaaataaaatgacatttttttGGGTAGGAAACAATAA

Function

NR:

description
intestinal-type alkaline phosphatase-like isoform X2

GO: NA

KEGG:

id description
K01077 E3.1.3.1, phoA, phoB; alkaline phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610103.2 False 1794 mRNA 0.53 11 7064368 7093597
XM_021610191.2 True 2387 mRNA 0.49 12 7064368 7094220

Neighbor

gene id symbol gene type direction distance location
alpi.1 LOC106574189 coding upstream 7850 7028550 ~ 7056518 (+)
b3gnt7 b3gnt7 coding upstream 364064 6684099 ~ 6700304 (+)
LOC110527749 armc9 coding upstream 412573 6559067 ~ 6651795 (+)
LOC110526525 LOC106613452 coding upstream 1296675 5664171 ~ 5767693 (+)
agxta LOC105025628 coding upstream 2107282 4948727 ~ 4957086 (+)
ankle1 LOC106574192 coding downstream 2079 7096299 ~ 7107509 (+)
LOC118966183 NA coding downstream 236232 7330452 ~ 7331042 (+)
LOC110528450 LOC106574163 coding downstream 320393 7414613 ~ 7550394 (+)
LOC110528753 LOC106574165 coding downstream 647342 7741562 ~ 7839951 (+)
LOC110528839 LOC106574168 coding downstream 746460 7840680 ~ 7882886 (+)
G5820 NA non-coding upstream 2194 7058141 ~ 7062174 (+)
G5815 NA non-coding upstream 50715 7012089 ~ 7013653 (+)
G5786 NA non-coding upstream 87701 6976249 ~ 6976667 (+)
G5780 NA non-coding upstream 94494 6969540 ~ 6969874 (+)
G5774 NA non-coding upstream 97384 6966770 ~ 6966984 (+)
G5846 NA non-coding downstream 13888 7108108 ~ 7108385 (+)
G5847 NA non-coding downstream 15508 7109728 ~ 7109940 (+)
G5849 NA non-coding downstream 17300 7111520 ~ 7192013 (+)
G5867 NA non-coding downstream 45321 7139541 ~ 7140409 (+)
G5868 NA non-coding downstream 46342 7140562 ~ 7141294 (+)
G5581 NA other upstream 252747 6810994 ~ 6811621 (+)
G5276 NA other upstream 546179 6517482 ~ 6518189 (+)
G3597 NA other upstream 2207303 4856525 ~ 4857065 (+)
G3596 NA other upstream 2208120 4854521 ~ 4856248 (+)
G3351 NA other upstream 2622460 4439966 ~ 4441908 (+)
G6434 NA other downstream 630826 7725046 ~ 7725609 (+)
G6518 NA other downstream 791171 7885391 ~ 7885907 (+)
G6807 NA other downstream 942397 8036617 ~ 8037154 (+)
LOC110501328 LOC106574178 other downstream 1135077 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 other downstream 1160922 8255142 ~ 8271732 (+)

Expression


Co-expression Network