LOC110529397 (LOC106574172)


Basic Information

Item Value
gene id LOC110529397
gene name LOC106574172
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8152073 ~ 8162387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611590.2
AGACGGGGGAAGACACATCATTTAGGCCAAAGATAGAAGCTCCATTCTTCTGATCCAGTCCTCGTGTATATCATGTTCTACTACTCTAGCCCAAAGCCTCTCTTACTGGTTGTCCTCATCGTGCTGTTCAACGgACACAACTGGGCAGAGAAAATGGTGGGAATCATAGGTCATGGGGTCACCATCCGCTTCTCATTTCAGAACATGTCCAAAGTATTTAATAATCGGTCAATTAGTctttacaaaaataataacaagatCGCTGAATGTAATCATGATGTGCACAGCTGTTGCTTACAAAGCCACCTCTGCTTCTCTGAGAATAAAGAGGCCTCTTTCTTCATCCAAAATCTGACATCAGTTGACAACGGAACGTATTGGATCATGTTGTTCCAAATCAATAGAGATCCTCCCATGCTAAAAAGCAATGAGGTGTCGCTTATCCTTCAATCGAATGGTAACACCGCAGAATCCCCATCATTCACCTCTAACGCCGCAGATGATGCTATCAGCGACCGTGGAAACGCCAACAATGTCTATGTCCTGATCATCTTTGCTGTTTTGGGGGTGTCCATCATAGCTCTGTTAATCGGACTGCTTGGTTGGTTCTGCTGGACCTACAAAAGGAGCCCAGAAAGGGACCAGCAAGAGAACCTCAAGGCCAAGCAACAGGGGTCAGGAGAGGCGTCCACCTCCATGTCTGTGTATTCTGTAGAATACGGTGTGCTGGACTTCAACAGTAGACCCAATGGAGAAGAGGCAAACAGGcatgggggggagagggagggaggagtggtaAGGTCTGCAGAGACAGTGGAATATGCTGCAATCACCTTTCCCCCACAACAAAGGGTGTCATACGGGAGATAGTGAGTCATCTGAAACTCTATTAAATACAAACAGCGTTGCCTGATTTGAACTGAATGCCATCAACATATGGAACAGGTGCTGAGAGAATGATGCTGCGGTTGATGTGTCACTCTGAGGTGATAGATACCGTAAGAATGGAAATACTTAGTCCCGTATTAATAAAAACACCCTCCCTGTGGCTATGCGTGACTGTACCCTACtggaaatacaaaaaaaaaaaataagttgtAGATACAATAACCCATTTGACTGTAACACGAATGTAattttaacatgttttttttttttttttttttcataaagTCATGGAACATTAATTGTGTGTAAAAATTTCCGGAAGGGTTTGCACAGATAAATACACCTTTAATAGGGTATTTTTTTTCTCACAGAGTGTCATGTTGTTTGTTTACTCTGACACTATTCGGATTACCAGAAGTATCTGGGGGGATTTTACAAAAGAATTAGCATGGTCCTCTGCAATCCAACTAAGTTCTCATTAAATGGAGTTTACTTGACACAcgtttgttttttttttcatcccTCAATGGTTTCAAATTCACAATGATTGACATATACATGTATACTGGGAAAATCAAGTTTCAAATAAATTATTTTGTATAATAGGTGATCATATCACGCGGATTACATTCTGATCTAAACGAGCTCTTTCACGGATGTTGTTTTTAGACTTTCAATGGCTCTCATGTAACAGTTTCTAATGTTTCCAGACAAATGCAGTGCATCAAGTGCTGTAATCTTGACACGATCGGTCTAGCGGAAGCCTCGAAGCATGGAGGATTTGGAGGATTTTCATTTTAATGTATCACTGGCAATTGCTATTAGGCAACGTTTGTGCAGAGttactctgtccagtgtctgtgttcttttgcccgtcttaatcttttttttttattggccagtttgagatatggctttttctttgcaactctgc

Function

NR:

description
uncharacterized protein LOC110529397

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611590.2 True 1822 mRNA 0.41 5 8152073 8162387

Neighbor

gene id symbol gene type direction distance location
nmur1a LOC106574171 coding upstream 66103 8048995 ~ 8085970 (+)
LOC118966768 NA coding upstream 199185 7952793 ~ 7952888 (+)
LOC110528925 hykk coding upstream 216856 7900761 ~ 7935217 (+)
LOC110528839 LOC106574168 coding upstream 269187 7840680 ~ 7882886 (+)
LOC110528753 LOC106574165 coding upstream 312139 7741562 ~ 7839951 (+)
LOC100135997 LOC100135997 coding downstream 19850 8117910 ~ 8197019 (+)
LOC110529481 LOC106574173 coding downstream 25542 8187929 ~ 8191228 (+)
LOC110529566 LOC106574176 coding downstream 30295 8192682 ~ 8199666 (+)
LOC110497697 LOC106574176 coding downstream 46946 8209333 ~ 8213887 (+)
LOC118943893 LOC106574176 coding downstream 61978 8224365 ~ 8225267 (+)
G6912 NA non-coding upstream 4596 8145046 ~ 8147477 (+)
G6821 NA non-coding upstream 64328 8086029 ~ 8087745 (+)
G6844 NA non-coding upstream 75475 8076370 ~ 8076598 (+)
G6838 NA non-coding upstream 83811 8067935 ~ 8068262 (+)
G6946 LOC106574176 non-coding downstream 47075 8209462 ~ 8225068 (+)
G6964 NA non-coding downstream 78048 8240435 ~ 8240724 (+)
G6967 NA non-coding downstream 80896 8243283 ~ 8249184 (+)
G6969 NA non-coding downstream 90075 8252462 ~ 8252670 (+)
G6978 NA non-coding downstream 101263 8263650 ~ 8263921 (+)
G6807 NA other upstream 114919 8036617 ~ 8037154 (+)
G6518 NA other upstream 266166 7885391 ~ 7885907 (+)
G6434 NA other upstream 426464 7725046 ~ 7725609 (+)
G5581 NA other upstream 1340452 6810994 ~ 6811621 (+)
G5276 NA other upstream 1633884 6517482 ~ 6518189 (+)
LOC110501328 LOC106574178 other downstream 66910 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 other downstream 92755 8255142 ~ 8271732 (+)
LOC118966784 LOC106574127 other downstream 1296561 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1821388 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1978857 10140230 ~ 10162948 (+)

Expression


Co-expression Network