LOC110497697 (LOC106574176)


Basic Information

Item Value
gene id LOC110497697
gene name LOC106574176
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8209333 ~ 8213887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989287.1
ATGGTTACCATTGTTTCCCCAGCGCCATGCCTGAGATGTAAGATAGTGGTGAACTGcaccaaccccaacaccatatcccTTTTGGCCGCCCTGGAGAACGTCATGAAGTTGTACTCCATACGACCTGTCATGAACCTCTCAACCCCCACCAACATCAGCATGTACTTCACTCTCTACGGCATCCTGGGTGTGGTAAGGAGTAGCAGGACAGCATGTATGGATGAAAACAGAGCTCCCATCGTCCCTTATGTGTACATTAAGCACACTGGTATAGTGCGAGACGCCAACCCTGTCAGAGTGGTTAGCTCCTGTAACCTGGAGATCTACATCTTCCCCTTTGACGTCCAGAACTGCACCTTCACCTTCAGATCCTACATCCACCACGTGTCGGACATAAGGATTATTTTAGGGAAGAAGGTGGAGGACATCCTGAAACGCTCCATTAGCGTGTTGTCCACCGAAGGGGAGTGGGAGCTGATGGACATCAAATCCAGCAAGTTCAAGTTATCAACATTCAATCAAGGAGAAAGCAACCCCTACGATGAGCTCTGCTTCTATATTGTCCTGAGGCGCAGAGCCACCCTCTACGTGGTGAACCTCCTGATCCCCAGCTGCTTTCTCATCACTGTGGATCTCTTCAGCTTCCTGCTGCCTCCCCAGAACGTGGACCGCTCCTCCTTCAAGATGACCCTAATTTTGGGCTACTCCGTCTTCCTGCTCATCGTGAATGACCTTCTGCCCGTCACAGGAAGCACCATTCCACTGATAAATGTGTTCTTTGCCATCTGCTTGGCTCTGATGGTGGCCAGCCTGCTGGAGACTATTCTCATCACCAACCTCCTGGTCGCCTCCTGCAACTTCCCCCCAGTGCCTGGCTGGGTCCGAGTGCTCGTACTGCGCTTCATGGGCACCCTCGTCTGGCTGCCTCAGAAATCCAGAGAGGACAAGATCATCTTCAATCCAGTTGCAAGAGATGTGAAAGTCTGCCCTCTAGTGTTGGTGGAGAGACAGGTTCAAACAGGAGAACCAGGTAAGATGTGGTCAAAGGCAGGCGATCCAGCCCTAGCGGAGCTGAGGAATCTGGGCAATGAGCTCCAGTCCATCCGCCTCCAGGTGGCCCAGCATGTGGACGGGAACCAGATCTCCCAGGACTGGATGCAGGTGGGCTACATCATAGACCGGCTGCTGTTTGGCATCTACTGCATCTTCATCACCTTCAGCTTCATCATCATCCTCAGCATCTGGAGTAATTCGTAcaaccagtga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989287.1 True 1266 mRNA 0.52 6 8209333 8213887

Neighbor

gene id symbol gene type direction distance location
LOC110529566 LOC106574176 coding upstream 9667 8192682 ~ 8199666 (+)
LOC110529481 LOC106574173 coding upstream 18105 8187929 ~ 8191228 (+)
LOC100135997 LOC100135997 coding upstream 25302 8117910 ~ 8197019 (+)
LOC110529397 LOC106574172 coding upstream 46946 8152073 ~ 8162387 (+)
nmur1a LOC106574171 coding upstream 123363 8048995 ~ 8085970 (+)
LOC118943893 LOC106574176 coding downstream 10478 8224365 ~ 8225267 (+)
LOC110501328 LOC106574178 coding downstream 15302 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 coding downstream 41986 8255142 ~ 8271732 (+)
LOC110529807 pfn2 coding downstream 272767 8486654 ~ 8494344 (+)
LOC110515166 ankub1 coding downstream 388838 8602725 ~ 8612667 (+)
G6912 NA non-coding upstream 61856 8145046 ~ 8147477 (+)
G6821 NA non-coding upstream 121588 8086029 ~ 8087745 (+)
G6844 NA non-coding upstream 132735 8076370 ~ 8076598 (+)
G6838 NA non-coding upstream 141071 8067935 ~ 8068262 (+)
G6964 NA non-coding downstream 26548 8240435 ~ 8240724 (+)
G6967 NA non-coding downstream 29396 8243283 ~ 8249184 (+)
G6969 NA non-coding downstream 38575 8252462 ~ 8252670 (+)
G6978 NA non-coding downstream 49763 8263650 ~ 8263921 (+)
G6983 NA non-coding downstream 59049 8272936 ~ 8274241 (+)
G6807 NA other upstream 172179 8036617 ~ 8037154 (+)
G6518 NA other upstream 323426 7885391 ~ 7885907 (+)
G6434 NA other upstream 483724 7725046 ~ 7725609 (+)
G5581 NA other upstream 1397712 6810994 ~ 6811621 (+)
G5276 NA other upstream 1691144 6517482 ~ 6518189 (+)
LOC118966784 LOC106574127 other downstream 1245061 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1769888 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1927357 10140230 ~ 10162948 (+)

Expression


Co-expression Network