LOC110529747 (tsc22d2)


Basic Information

Item Value
gene id LOC110529747
gene name tsc22d2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8330314 ~ 8419050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986955.1
TAAAAAGTAAATCAGCGTATCCCATTCGAATTCTCCAATGATTTACGTAAGTCAATGCGCAATCCTCCCAGAGTGCTGTTCGTTTCCTTTTTTGCCATCTTGTCGAGTGGTAAGAGGAAGAGCAGAGCGGCAGTTAGCTTGCTGCTAGTAAGTAGGTTTGTGACATAGCAGCAGCTCTAAATAGTGAGAGAACCAGAGGACGAGGAAGATAAACTTTATTAAATTCAGGAATATCTGTCTATCGGAGGATATAGATTAAATGTGAAGATTTGGAAGAACATTAGGACTTGTTTACATGATGTCGTACAGGCTTGTTTATAGGTAAGGATCGAACTAACGACACCGATAGCTATTATTTGGTTAGCTTTGAGCTacattagctagccagctaaaagGGAGAGTGGTGAACGGAGCCCGCCTCAGACTAAAGTGTTGGTAGCAGCTGGTGAGCGGTAACTGCAACAGGGGGCTGCTTACAACTCCGGGGCCGGGACAATAACGCACGCAGGAGGCCAGGTTCGGGAagaactggaggagaggaggtggtgaTATCGGGATACTTGTCACACAGCGACAAGCTAACGTTACCCTGTCCGATTTCGGACGGTgggctgttttttttattttttttttaacagacaATCTGCAACAGGAGAGGGGAACAAGGAATATGTCGCATACTTGCCTGCTATAATCTGTCAATTCTTTAGCTAGCTCGTTAAAAGCTATCACTTATTGAGCTCAGACGAAACGCTTATCAAGGAAATAGACAGTCACTTGAGTGACTAGCAAAGATATTCAACATGTCAAAAATGCCAGCAAAGAAGAAAAGTTGTTTTCAGATCACGAGTGTGACACAGGCTCAGGTGGCGGCCAGTAGCATCACGGATGACACCGAGAGTCTGGACGACCCGGACGAATCCAGGACCGAGGATGTGTCATCCAAAATATTCGACGTGTCCCTGGCCGATCCGGGAGTATGTGATCGAAGTTCATCCGAGGAGACTTTAAACAATGCAGGGGAGGCGGAGGCAGCTGTCATGGCCTTACATTTACGTCAAGAGGGGCAGCCAGTAGCTGCAACATGTCCTTTTAATGGGAGCCATGCTCATAGAAGTACAGGCCTGAGCCATATCAACCCACAATTTTTAGGGGGTAGTGTTCCTGTACCAGCTGCGAGTCAGCCCTCCATTCCGACCTCGGCCACCCAGCAGCCGACAACGGTCAATGCTGGCCCTGCTGCGAATGTTTCCCCAAGTGTATCTCAAACGCCCCCCGCGGCGCCTAGCTCTACAACGACGACAAGCTGTAGTTCACGTTTCAGGGTCATTAAACTTGACCACAGTACAGGAGAGCCCTTCAGACGGGGCAGATGGACATGTATTGAGTTCTACGAGAGAGATTCTGAAGGCTCTAGCATgagcaggactgtggatagcataAAACACGCTGTCACCATTGACCACAATGCAGACAGTGGGCTAGGGACCACAGGAAGCAATGTGGTTGCTCCTAGTACTCTCTCCACACAGGCTCAGGAGTCCACAGGTGATAGTGGCTACTACACTTTCCACCATGGCCACCCTCCGGAGCTTCAGCAGCAAGGCTACAGCCAAGAGCCCCAGACAGGGAGTGGGGCGAATGCCTTACAGCCCACAGGGTACTCAGCGACGGTATCGCAGGCACAGGTCAACGTGCAGCCCGCTGTCCCCCAAATGCTTCAACCTATTGGCCTCAATGGCGTGCCCCAAGGTGGCATGCTGCAAAAATCCCCCCTTGTGCCTCTTGCCACGCAGGCCCAGCAGTTTGCCTACTCCGCTCATCCCTCTGGAATGCACCCCAGTCAGCTGGACTACCGACAGCAGCACTTAGCCCCTCTACAGCCTCAGGGCTCCAACCCTCAAACCCACCCCATGGCCTCCCTCTCTGTGGGGCCTCTGTCGAGTCAGGGCCCCTCGTCTGTCAACACCCCTCAGGCTGGGGAGCTGTCTGGGTCTTTGCACGGCGGTCCATTAGCCTCGACCCATGGCCTGTTGCTGCAGGTAGCCAGCGGGGCCGTTATGTCTCCTGCCCTACAGCAGCCGGTGAGTCATCCTCAGCCTTCAGGAGGAGTGGGCAGGGCCTCCGTTGTCCAGAATGTGCCTGCCACAGTGCCCAGTGCCACCAACACCCCCCCAGGCATGCCAAGCCAAGCCCCTGACCCAGGAGGACTCCCCCTGGCCCAGGTAGCTCGCGGTGAGGCCACAGCTGGAGCAGCCGGGCAGGGCCTTCCCACGGCCAGCCAGGGGGACGACAGCCGCAGGAGGTCGGACACCCTTCCTCAGCCCAATGCAACCCCTGGAAAAGATGTCATGAGGCCTTTCATCCCTGAGAGCTTGCAGCTGGCCACTCCCACCGTCAACAGCCTGTTCGGGATAGCCATTCCCATGGATGGAGATGAGGATGGTTCTTCTGGAGCCAGTGTTGTAGCCATCGATAACAAGATCGAGCAAGCGATGgaCCTAGTGAAGAGCCACCTGATGTATGCggtgagggaggaggtggaggttcTGAAGGAGCAGATCAAGGAGCTGTATGAGAGGAACTCTCAGCTGGAGCGGGAGAACGCTGTGCTCAAGTCCCTGGCCAACACTGATCAGCTCACCCAGCTGTCGTCCACCCAAATCAGCCCGGCCGGCAGCACCTCCCCGCCTCAGCAGCAACCCCCCGCCAATACCAAACCCCACTTGGAGGGTGCAGCCCAGGCTCTCAGCCTGCTCCAGCAGCCCAACGTCACCTCGGCGTGATCACCTGCCTCCGTAAAACACCTCCCCGAAATACGCGAGGAGGAGTCCCCAAACAACCAACTAACCAACCATAATCAACACTTGATTATGTTTTATTGAGAAGCAAAATCGGCCTTTGTTTGCCACCCTTGTCTTTTTGAGTGGCGTTAAGAGCCATGCTTCAGtgtgctgctgctgtcgtcgggCCTTCCCAGTATTAGACCATCATCATCCTGTGAAAGCATTGTTTTGTCCGGGCGTCCCGTGTTCAGTGGAAGGGGAACTGGCCAGGGGCGAGTACATCGCAGCCTGGAGTCCCCACGCAGGGGAGAGAGGTGATGGGCTGTATTGTGGCGGGATAACTGGAGGTGGTCCAAAGGGCCCCCCAAAAATCAACACTGGGCTGTTGGTGGTGAGTGGAAAAGAACGGGGGAATGAGAGGGACAAAGAGACTGAGGTGGGGAAGAGGATTCTCACCCTACCATAAGAGGAATGTGTGTCTCACCGTGAGAAGAGCGAGACTAGTTTTCCCAGAACCACCAcactttgacccaagttaaaaaaataaaatttaaaaaaaaa
>TU8936
TTTGTTCAGATGGGGCGGTGTAGTCAGTGGACGACAGGCATCGACCGGGCGTAGCTAAAAGGATCAGAAACGCAACATTTTGGGGGTTTAAATAGAGATTTGTGAGATTATTTAATGTGTCTACGAGACGTTGGCCACTGAACGACTTCTTCTGGAGCCAGTGTTGTAGCCATCGATAACAAGATCGAGCAAGCGATGgaCCTAGTGAAGAGCCACCTGATGTATGCggtgagggaggaggtggaggttcTGAAGGAGCAGATCAAGGAGCTGTATGAGAGGAACTCTCAGCTGGAGCGGGAGAACGCTGTGCTCAAGTCCCTGGCCAACACTGATCAGCTCACCCAGCTGTCGTCCACCCAAATCAGCCCGGCCGGCAGCACCTCCCCGCCTCAGCAGCAACCCCCCGCCAATACCAAACCCCACTTGGAGGGTGCAGCCCAGGCTCTCAGCCTGCTCCAGCAGCCCAACGTCACCTCGGCGTGATCACCTGCCTCCGTAAAACACCTCCCCGAAATACGCGAGGAGGAGTCCCCAAACAACCAACTAACCAACCATAATCAACACTTGATTATGTTTTATTGAGAAGCAAAATCGGCCTTTGTTTGCCACCCTTGTCTTTTTGAGTGGCGTTAAGAGCCATGCTTCAGtgtgctgctgctgtcgtcgggCCTTCCCAGTATTAGACCATCATCATCCTGTGAAAGCATTGTTTTGTCCGGGCGTCCCGTGTTCAGTGGAAGGGGAACTGGCCAGGGGCGAGTACATCGCAGCCTGGAGTCCCCACGCAGGGGAGAGAGGTGATGGGCTGTATTGTGGCGGGATAACTGGAGGTGGTCCAAAGGGCCCCCCAAAAATCAACACTGGGCTGTTGGTGGTGAGTGGAAAAGAACGGGGGAATGAGAGGGACAAAGAGACTGAGGTGGGGAAGAGGATTCTCACCCTACCATAAGAGGAATGTGTGTCTCACCGTGAGAAGAGCGAGACTAGTTTTCCCAGAACCACCAcactttgacccaagtaaaaaaaaaaaataataataataataataataat
>TU8938
TGACATAGCAGCAGCTCTAAATAGTGAGAGAACCAGAGGACGAGGAAGATAAACTTTATTAAATTCAGGAATATCTGTCTATCGGAGGATATAGATTAAATGTGAAGATTTGGAAGAACATTAGGACTTGTTTACATGATGTCGTACAGGCTTGTTTATAGGTAAGGATCGAACTAACGACACCGATAGCTATTATTTGGTTAGCTTTGAGCTacattagctagccagctaaaagGGAGAGTCAGAAGCTCACATTAGCAGAAAATGAAGTTTGACCCATCTTTTTGTTCATAATGCAAACATTTAGATTCTGATTGTAGTTTACCAATCTGTACTTCAATAAAGAAACGTTCGAAACTTAACGGAAACTTTGTACACATTTCACAACTCCAGCTTGAACCCGGTAAATTCTTGTATGAGCATATTATGGTATGTCCTGTCTGTGTTACATGTATTTTGTGCCTCCTGCACCATCGCCGGTTGTCGGGCGACCTGGTTTATTCTTTGTGGCTTATAATTGTACAATCGGTCATCTTTAGCAGGATGAATTTAGATTTCAACTTCAGTTgggttttttttaaaaattttttatTTGAAGGAGATGCTGTGCACATGCCAGGTGTACTGTATGAAAGTGATTTATCACTGAGCCTTGGAGAAAATATCTTAACAATGCCCTTGTAATGTGCTGTTCTGACGGTTTCAGttttcagtaaaaaaaataaattactGTTTTATTAAGA

Function

symbol description
tsc22d2 Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in paraxial mesoderm; presumptive segmental plate; and somite. Orthologous to human TSC22D2 (TSC22 domain family member 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986955.1 False 3347 mRNA 0.54 3 8372593 8419050
TU8936 False 1056 TUCP 0.46 4 8330314 8375564
TU8938 True 743 lncRNA 0.45 3 8371129 8418890

Neighbor

gene id symbol gene type direction distance location
LOC110529671 rubcn coding downstream 31506 8274638 ~ 8341087 (-)
LOC118965595 NA coding downstream 190462 8177281 ~ 8182131 (-)
dynlt2b tctex1d2 coding downstream 225090 8140168 ~ 8147503 (-)
ddx59 ddx59 coding downstream 633404 7729593 ~ 7739189 (-)
LOC110531419 LOC106574164 coding downstream 647141 7704811 ~ 7727531 (-)
LOC110508833 rnf13 coding upstream 76875 8495925 ~ 8580590 (-)
LOC110530501 LOC106574127 coding upstream 199730 8618780 ~ 8666735 (-)
LOC118966038 LOC106574155 coding upstream 224946 8643996 ~ 8648869 (-)
LOC110515173 LOC106574127 coding upstream 238589 8657639 ~ 8665971 (-)
LOC110515722 LOC106574127 coding upstream 239303 8658353 ~ 8707910 (-)
G7214 NA non-coding downstream 71884 8272924 ~ 8300709 (-)
G7250 NA non-coding downstream 113066 8259327 ~ 8259527 (-)
G7241 NA non-coding downstream 123389 8243322 ~ 8249204 (-)
G7238 NA non-coding downstream 131472 8240876 ~ 8241121 (-)
G7213 LOC106574176 non-coding downstream 140807 8197126 ~ 8231786 (-)
G7303 NA non-coding upstream 2524 8421574 ~ 8421860 (-)
G7310 NA non-coding upstream 11461 8430511 ~ 8430715 (-)
G7321 NA non-coding upstream 20217 8439267 ~ 8439554 (-)
G7325 NA non-coding upstream 24094 8443144 ~ 8443343 (-)
G7327 NA non-coding upstream 27317 8446367 ~ 8452983 (-)
G7184 LOC100135997 other downstream 188660 8164276 ~ 8183933 (-)
G6810 LOC107579696 other downstream 333130 8039179 ~ 8039463 (-)
G6706 NA other downstream 487593 7884343 ~ 7885000 (-)
G6347 NA other downstream 854772 7514111 ~ 7517821 (-)
G7985 NA other upstream 734220 9153270 ~ 9153947 (-)
G7965 NA other upstream 762405 9181455 ~ 9194911 (-)
G8455 LOC106574127 other upstream 1148891 9567941 ~ 9590586 (-)
G10263 NA other upstream 3143687 11562737 ~ 11563125 (-)
G10343 NA other upstream 3226030 11645080 ~ 11645703 (-)
LOC110528129 nppc coding downstream 1550435 6774389 ~ 6779879 (-)

Expression


Co-expression Network