LOC110510915 (ankub1)


Basic Information

Item Value
gene id LOC110510915
gene name ankub1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8764989 ~ 8771138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989294.1
ATGAGGGTCTTCATCGCCTTCGATGGTTCCTGTGAGCCTTTTGACGTCTCTCCTGACCAGACCGTGGGGAGCGTAAAACTGATGGTCAAGGATTACTTCCACTTGCAACTGTCAGACGACAAGCAGGTGAGGCACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAACTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGCGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGTGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCGGCCTGCAACTCTACGACTGCAACCGGCTGCACGACTACGCCATTGACCTGGgggcTACTCTACGGTTAGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGATGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACTTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGGTTCCCGCTGTCGCCTCCATCAAGCGCGGCCAGCTCACCATCCTCAAACTCTTTATCGCCAGCAGCGTTCTGACCCTTGACCCTGGGGATCCCGACAGGCGTGACCCCCTGAGGATCGCCCTCCAGTACGGCCACAGAGAGTGTGTGCGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCCTCCAAGCCCAAGAGGATTGAGGCCAAGGTTGGTATCAGGGTGATGTCCACAGCCTCTCGACGTTTGACCCCCATCAACTGCCCATCTCATGTATCCTGCCCGCTCCGCGCCCTGGCATCCCGGGATAAACCTCTTTAA

Function

symbol description
ankub1 Orthologous to human ANKUB1 (ankyrin repeat and ubiquitin domain containing 1).

NR:

description
protein ANKUB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989294.1 True 1209 mRNA 0.61 5 8764989 8771138

Neighbor

gene id symbol gene type direction distance location
LOC118936489 ankub1 coding upstream 17285 8721570 ~ 8747704 (+)
LOC110519734 ankub1 coding upstream 71229 8667169 ~ 8693760 (+)
LOC110532690 NA coding upstream 130815 8624886 ~ 8634174 (+)
LOC110515166 ankub1 coding upstream 152322 8602725 ~ 8612667 (+)
LOC110529807 pfn2 coding upstream 270645 8486654 ~ 8494344 (+)
LOC118966266 ankub1 coding downstream 19093 8790231 ~ 8798967 (+)
LOC118966103 ankub1 coding downstream 28320 8799458 ~ 8851372 (+)
ndufb5 LOC106574141 coding downstream 96972 8868110 ~ 8871284 (+)
usp13 LOC106574137 coding downstream 106453 8877591 ~ 8915400 (+)
LOC110531220 NA coding downstream 400830 9171968 ~ 9183082 (+)
G7417 NA non-coding upstream 41765 8722883 ~ 8723224 (+)
G7397 NA non-coding upstream 88974 8620933 ~ 8676015 (+)
G7396 NA non-coding upstream 144065 8620570 ~ 8620924 (+)
G7387 NA non-coding upstream 154139 8610502 ~ 8610850 (+)
G7573 NA non-coding downstream 93043 8864181 ~ 8865177 (+)
G7581 NA non-coding downstream 103643 8874781 ~ 8877527 (+)
G7740 NA non-coding downstream 359466 9130604 ~ 9130845 (+)
G7757 NA non-coding downstream 382400 9153538 ~ 9153843 (+)
LOC110505168 LOC106574179 other upstream 509111 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 534754 8229189 ~ 8231566 (+)
G6807 NA other upstream 727835 8036617 ~ 8037154 (+)
G6518 NA other upstream 879082 7885391 ~ 7885907 (+)
G6434 NA other upstream 1039380 7725046 ~ 7725609 (+)
LOC118966784 LOC106574127 other downstream 687810 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1212637 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1370106 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 2705526 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 4467475 13238613 ~ 13295452 (+)

Expression


Co-expression Network