LOC118966781 (LOC106574155)


Basic Information

Item Value
gene id LOC118966781
gene name LOC106574155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9464046 ~ 9471323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990390.1
CATGAAGACAGTGGTTAGATTCTGCCATTGGGACTGCTCTGATGTTTCCATTCTCTCCTGGTTATGACCATAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGAAGCAAAGCAGCACTGTggaaaccacagaagaagagagCCTCAACAGTGCGAAAAATCTTGAGTCTTTTTCACTGATTATCAACTTCCTGCAGAACCTAACTGAGGAGCAATGGAGTAGGATTCGTAATGGCATTTCTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCCTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGGTTAACACCAAGTCCCACGTGAGATTTACTGAGGCTGGTGTATCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTATGGatcaggaagaggaagaagagcagGAATCACAACAACTTAAGTTCAAGGAGATTTACCTGACTAAGGAGATGGGCAGTCTGGGCAGTGGAAGCTACTGCCCAAAACCATTGCCCAAGCCAGCCATGAGaaccTCTCTGTCTGATGTGCAGAAGAAGACAACCAACTCTGACTCGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTCGTCACCTGTGTGCAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTCCGAAGATGACCCCTGCTGTAATGGCAGAAGTGATTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTCAAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACCAACATAATTTGCTGAAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGACGATCTTGATGCCCTGATAAGGAAATACGAGAGCAGCTACAATATTGGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCCAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGCCAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCGTTCAGTCTGAGTTAACAGCTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGGCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGAGATTTGCCCTAAAgagcattgtcacatctgatgACAACATCACAAATTCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGTGCTCAAAACTTCTTTGGGCACAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCGTCTCAGAGCTTCTGGTCTTGTACAACACTGAGATGTCAAAGGAGGACCCCCTGTACACTGTTGGAGAAAAAGGATCAGACTTCTCTATTGAGAGACAACAATTTGTAGAGGGCGTTCTGGCTCAGCTTGGGGATATCTCCCATTCCAGGGCCTCATCACCAATAGTATATGAGTTCCCCTGTCAAATTGAGGAGAGCAGAAGTAAGGCCACAGCTTTGACCAGTCTATTAGATTGCATGAAAAAACTCTCAAGTGAGGAAttcaagagagacaccactcaaGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCAACAGTAGCTTAACTAGTGCACAGCCTGCTTATTCTGTAGCATCCAAGTCTTGTTCCGTTCAAAACCAGAGAACCTTGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGACACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGGACAAAAGCGAAAGAACAGGATCTGGTCTGCTACCACTAGTTTATATAAAAATATTAAGAAGACATTAAAGGGCTTCACCATTCACCGGCGGAGGTCAGACGTGCAGAGAAGAATGTCTAGCCGTACAACCACAGAGGACTCTGGACATCTTGGGACTAAGGAGTACCTTGGTTTGGCAAGCCAGAACTTGACGCAAGCTAGTAAGAGTGTGCCTCACTTGCCCAGTTTGAACCAGGAAGTGACTCTACACATGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGGTCTAATGAACAATAGTACCAAACAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATAGTGAAAGATCTGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAATAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAATGTCAGACACAACACTTGGTTCAATCCAAATATTTACATATCAAAGCAGTCCTGCTTCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACAATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTAAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccatctctctaacacCTACTTCAAAATCAAAGCAGTCAGAATGGGACTTCACCTTGCCCGGTACTCCCATCCCCACTGAATTATCTGCTCAGAGTGACTTTCCCATTGTAAGAAACATGATCATTCAGGACTTGTTTCACACAGAGAACTTACTTCCCCCATCCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACGAAATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTCTCATCCTGACAACCTCCGATCTGCTGttaggaaattgagaaaaataatTTCCACTGGGACCATCCACCTTTTCAGTCATGAATTTGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAGGAAGCTCTCCTCTCAGCTTCTCCAGATATTTGCCGAAGAGACAGTGAAGGGCTTCCTAAAACAGTGGTTAGATGAGTCTGAAAATATCAACATTGATGTTTCAGTCCAGAATGAACCAAGCACCTCTACTTGCATGGTCTTTCCTATCCAGCTCAATCCGAGCAAGCCAGAGGATAGTGACACAATGAATCAGCTCACGAAAGTCATGGTCAACCAAATGATGGATGCCTTATCAGTTGGCTCAAGTCATCAAATGATCACCAAAGCCAATGCCAAATGTTCTTTTGAGTCCggtaccagcatggccaccagagACATTGTAGAAGGGATGTTGGATTTGGTAAGGGATAGCACCAGCAGTACTGGAGAGCAGATCCCCATCTTCAAGTCCAAGAAAAGCAAGAAAACCATGTTCAGCAAGATATGCTTTAACATAAAGGGTTCCAAGAAAGTTAGAAAGGACCACTGTCCTCAAAAGTCTATGgagtaccagcctcagaacacTTCCCCTACTGTGTACTTTACAGAGTCGAGGACAAATTCTCATGGCTCCTTTGCTCCAGAGGGAAATGACATCGCATATTCCTTCCCACCTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGAATGTATAGAGCCATCACTAGAAGCTTCTCCAACCCAAGATAATTTTCCTCATTAAATGAGATTGCATTCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106574155

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990390.1 True 4758 mRNA 0.46 7 9464046 9471323

Neighbor

gene id symbol gene type direction distance location
LOC118966784 LOC106574127 coding upstream 3688 9450932 ~ 9460358 (+)
LOC118966743 LOC106574127 coding upstream 27167 9428517 ~ 9436879 (+)
psmd1 psmd1 coding upstream 163981 9240119 ~ 9300065 (+)
LOC110531147 cssa16h2orf72 coding upstream 242638 9218658 ~ 9221408 (+)
LOC110531220 NA coding upstream 280964 9171968 ~ 9183082 (+)
LOC118936726 LOC106574155 coding downstream 5365 9476688 ~ 9477259 (+)
LOC110510917 LOC106574155 coding downstream 9716 9481039 ~ 9483610 (+)
LOC118936730 LOC106574155 coding downstream 17627 9488950 ~ 9489521 (+)
LOC118936706 LOC106574155 coding downstream 21998 9493321 ~ 9496279 (+)
LOC118936734 LOC106574127 coding downstream 34565 9505888 ~ 9513475 (+)
G8075 NA non-coding upstream 96947 9366476 ~ 9367099 (+)
G8032 NA non-coding upstream 148622 9312415 ~ 9315424 (+)
G8031 NA non-coding upstream 159936 9303962 ~ 9304110 (+)
G8030 NA non-coding upstream 160458 9303092 ~ 9303588 (+)
G8009 NA non-coding upstream 225813 9238004 ~ 9238233 (+)
G8142 NA non-coding downstream 45532 9516855 ~ 9557160 (+)
G8143 NA non-coding downstream 49464 9520787 ~ 9561179 (+)
G8144 NA non-coding downstream 55173 9526496 ~ 9677481 (+)
G8157 NA non-coding downstream 102322 9573645 ~ 9574529 (+)
LOC110505168 LOC106574179 other upstream 1208168 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1233811 8229189 ~ 8231566 (+)
G6807 NA other upstream 1426892 8036617 ~ 8037154 (+)
G6518 NA other upstream 1578139 7885391 ~ 7885907 (+)
LOC110510920 LOC106574155 other downstream 512452 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 669921 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 2005341 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 3767290 13238613 ~ 13295452 (+)
G12410 NA other downstream 4157540 13617059 ~ 13666871 (+)

Expression


Co-expression Network