LOC118936706 (LOC106574155)


Basic Information

Item Value
gene id LOC118936706
gene name LOC106574155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9493321 ~ 9496279 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933356.1
ACGTGCAGAGAAGAATGTCTAGCCATACACCCACAGAGGACTCTGGACATCTTGTGACTAAGGAGTACCTTGGTTTGGCAAGCCAGAACTTGACGCAAGCTAGTAAGAGTGTGCCTCACTTGCCCAGTTTGAACCAGGAAGTGACTCTACACATGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGGTCTAATGAACAATAGTACCAAACAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATATTGgtaggtggtgttctgtctcaGCTGAATGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTTTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATAGTGAAAGATCTGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAATGTCAGACACAacacttggttcaatcccaatATTTACATATCAAAGCAGTCCTGCTTCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTTGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGGCACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCatgctcctccatctctctaacacCTACTTCAAAATTAAAGCAGTCAGAATGGGACTTCACCTTGCCCGGTACTCCCATCCCCACTGAATTATCTGCTCAGAGTGACTTTCCCATTGTAAGAAACATGATCATTCAGGACTTGTTTCACACAGAGAACTTACTTCCCCCATCCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACGAAATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTTTCATCCTGACAACCTCCGATCTGCTGttaggaaattgagaaaaataatTTCCACTGGGACCATCCACATGTTCAGTCATGAATTTGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAGGAAGCTCTCCTCTCAGCTTCTCCAGATATTTGCCGAAGAGACAGTGAAGGGCTTCCTAAAACAGTGGTTAGATGAGTCTGAAAATATCAACATTGATGTTTCAGTCCAGAATGAACCAAGCACCTCTACTTGCATGGTCTTTCCTATCCAGCTCAATCCGAGCAAGCCAGAGGATAGTGACACAATGAATCAGCTCACGAAAGTCATGGTCAACCAAATGATGGATGCCTTATCAGTTGGCTCAAGTCATCAAATGATCACCAAAGCCAATGCCAAATGTTCTTTTGAGTCCggtaccagcatggccaccagagACATTGTAGAAGGGATGTTGGATTTGGTAAGGGATAGCACCAGCAGTACTGGAGAGCAGATCCCCATCTTCAAGTCCAAGAAAAGCAAGAAAACCATGTTCAGCAAGATATGCTTTAACATAAAGGGTTCCAAGAAAGTTAGAAAGGACCACTGTCCTCAAAAGTCTATGgagtaccagcctcagaacacTTCCCCTACTGTGTACTTTACAGAGTCGAGGACAAATTCTCATGGCTCCTTTGCTCCAGAGGGAAATGACATCGCATATTCCTTCCCACCTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGAATGTATAGAGCCATCACTAGAAGCTTCTCCAACCCAAGATAATTTTCCTCATTAAATGAGATTGCATTCATTTGTTGTCATATgttgactgttttgctagcacagactgtaaTATGTTCTGCGATTCATCCAcatgcattgaggagtataccacctcagtcacaggCTACATCAATAAGTGGATCGACAACGTCGtgtccacagtgaccgtatgtacatatccccgacagaagccatggattacaggcaacatccacaccgcgctaaaggctagagctgcttctttcaaggagcgggacactaatccagacacttatatgtaatcctgctatgccctcagactaaccatcaaacaggcaaagactATATCTATAAGCCTCATCAAAAGGAACGAAATTCTAAGTTGTCCGCATTGTTTCAGGCATCATCCGTTCCAAAGTCTCATCTTGttcactgt

Function

NR:

description
PREDICTED: uncharacterized protein LOC106574155

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933356.1 True 2661 mRNA 0.45 3 9493321 9496279

Neighbor

gene id symbol gene type direction distance location
LOC118936730 LOC106574155 coding upstream 3800 9488950 ~ 9489521 (+)
LOC110510917 LOC106574155 coding upstream 9711 9481039 ~ 9483610 (+)
LOC118936726 LOC106574155 coding upstream 16062 9476688 ~ 9477259 (+)
LOC118966781 LOC106574155 coding upstream 21998 9464046 ~ 9471323 (+)
LOC118966784 LOC106574127 coding upstream 32963 9450932 ~ 9460358 (+)
LOC118936734 LOC106574127 coding downstream 9609 9505888 ~ 9513475 (+)
LOC118936861 LOC106574155 coding downstream 31192 9527471 ~ 9534999 (+)
LOC118966312 LOC106574127 coding downstream 48058 9544337 ~ 9551047 (+)
LOC110517099 LOC106574127 coding downstream 55981 9552260 ~ 9555778 (+)
LOC110522382 LOC106574127 coding downstream 68213 9564492 ~ 9572580 (+)
G8075 NA non-coding upstream 126222 9366476 ~ 9367099 (+)
G8032 NA non-coding upstream 177897 9312415 ~ 9315424 (+)
G8031 NA non-coding upstream 189211 9303962 ~ 9304110 (+)
G8030 NA non-coding upstream 189733 9303092 ~ 9303588 (+)
G8142 NA non-coding downstream 20576 9516855 ~ 9557160 (+)
G8143 NA non-coding downstream 24508 9520787 ~ 9561179 (+)
G8144 NA non-coding downstream 30217 9526496 ~ 9677481 (+)
G8157 NA non-coding downstream 77366 9573645 ~ 9574529 (+)
G8158 NA non-coding downstream 79557 9575836 ~ 9788175 (+)
LOC110505168 LOC106574179 other upstream 1237443 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1263086 8229189 ~ 8231566 (+)
G6807 NA other upstream 1456167 8036617 ~ 8037154 (+)
G6518 NA other upstream 1607414 7885391 ~ 7885907 (+)
LOC110510920 LOC106574155 other downstream 487496 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 644965 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 1980385 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 3742334 13238613 ~ 13295452 (+)
G12410 NA other downstream 4132584 13617059 ~ 13666871 (+)

Expression


Co-expression Network