LOC118937622 (LOC106574155)


Basic Information

Item Value
gene id LOC118937622
gene name LOC106574155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9606630 ~ 9609304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936912.1
ACAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGGCTTCACCATTCACCGGCGGAGATCAGACGTGCAGAGAAGAATGTCTAGCCATACACCCACAGAGGACTCTGGACATCTTGTGACTAAGGAGTACCTTGGTTTGGCAAGCCAGAGCTTGACGCAAGCTAGTAAGAGTGTGCCTCACTTGCCCAGTTTGAACCAGGAAGTGACTCTACACATGGGTGTCAGAGAGTTCAAAACTTCTCTGGACTGAAACAGAAGAGGGTCTAATGAACAATAGTACCAAACAGGTCATTTCAACAATCTTGACCTCATGTGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATATTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACGTTCTAGTCATGCGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATAGTGAAAGATCTGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAATAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACAGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATATTTACATATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTAAGCTCTCAGGATCCATGCTGGAGGATATTGGCACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccacctctctaacaCCTACTTCAAAATCAAAGCAGTCAGAATGGGACTTCACCTTGCCCGGTACTCCCATCCCCACTGAATTATCTGCTCAGAGTGACTTTCCCATTGTAAGAAACATGATCATTCAGGACTTGTTTCACACAGAGAACTTACTTCCCCCAACCTTTGTGGACAAAGTCAGACAAGCTGCTGGGGTGGTAGTGGACGAAATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTCTCATCCTGACAACCTCAGATCTGCTGttaggaaattgagaaaaataatTTCCACTGGGACCATCCACATTTTCAGTCATGAATTTGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCAGACTTCAGACTGCTTCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAGGAAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAATAGACAGTGAAGGGCTTCCTAAAACAGTGGTTAGATGAGTATGAAAATATCAACATTGATGTTTCAGTCCAGAATGAACCAAGCACCTCTACTTGCATGGTCTTTCCTATCCAGCTCAATCAGAGCAAGCCAGAGGATACTGACACAATGAATCAGCTCACGAAGGTCATGGTCAACAAAATGATGGATGCCTTATCAGTTGGCTCAAGTCATCAAATGATCACCAAAGCCAATGCCAAATGTTATTTTGAGTCCagtaccagcatggccaccagagACATTGTAGAAGGGATGTTGGATTTGGTAAGGGATAGCACCAGCAGTACTGGAGAGCAGATCCCCATCTTCAAGTCCAAGAAAAGCAAGAAAACCATGTTCAGCAAGATATGCTTTAACATAAAGTGTTCCAAGAAAGTTAGAAAGGACCACTGTCCTCAAAAGTCTATGgagtaccagcctcagaacacTTCCCCTACTGTGTACTTTACAGAGTCGAGGACAAATTCTCATGGCTCCTTTGCTCCAGAGGGAAATGACATCGCATATTTCTTCCCACCTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGAATGTATAGAGCCATCACTAGAAGCTTCTCCAACCCAAGATAATTTTCCTCATTAAATGAGATTGCATTCA
>XR_005034856.1
ACAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGGCTTCACCATTCACCGGCGGAGATCAGACGTGCAGAGAAGAATGTCTAGCCATACACCCACAGAGGACTCTGGACATCTTGTGACTAAGGAGTACCTTGGTTTGGCAAGCCAGAGCTTGACGCAAGCTAGTAAGAGTGTGCCTCACTTGCCCAGTTTGAACCAGGAAGTGACTCTACACATGGGTGTCAGAGAGTTCAAAACTTCTCTGGACTGAAACAGAAGAGGGTCTAATGAACAATAGTACCAAACAGGTCATTTCAACAATCTTGACCTCATGTGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATATTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACGTTCTAGTCATGCGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATAGTGAAAGATCTGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAATAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACAGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATATTTACATATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTAAGCTCTCAGGATCCATGCTGGAGGATATTGGCACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccacctctctaacaCCTACTTCAAAATCAAAGCAGTCAGAATGGGACTTCACCTTGCCCGGTACTCCCATCCCCACTGAATTATCTGCTCAGAGTGACTTTCCCATTGTAAGAAACATGATCATTCAGGACTTGTTTCACACAGAGAACTTACTTCCCCCAACCTTTGTGGACAAAGTCAGACAAGCTGCTGGGGTGGTAGTGGACGAAATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTCTCATCCTGACAACCTCAGATCTGCTGttaggaaattgagaaaaataatTTCCACTGGGACCATCCACATTTTCAGTCATGAATTTGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCAGACTTCAGACTGCTTCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAGGAAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAATAGACAGTGAAGGGCTTCCTAAAACAGTGGTTAGATGAGTATGAAAATATCAACATTGATGTTTCAGTCCAGAATGAACCAAGCACCTCTACTTGCATGGTCTTTCCTATCCAGCTCAATCAGAGCAAGCCAGAGGATACTGACACAATGAATCAGCTCACGAAGGTCATGGTCAACAAAATGATGGATGCCTTATCAGTTGGCTCAAGTCATCAAATGATCACCAAAGCCAATGCCAAATGTTATTTTGAGTCCagtaccagcatggccaccagagACATTGTAGAAGGGATGTTGGATTTGGTAAGGGATAGCACCAGCAGTACTGGAGAGCAGATCCCCATCTTCAAGTCCAAGAAAAGCAAGAAAACCATGTTCAGCAAGATATGCTTTAACATAAAGTGTTCCAAGAAAGTTAGAAAGGACCACTGTCCTCAAAAGTCTATGgagtaccagcctcagaacacTTCCCCTACTGTGTACTTTACAGAGTCGAGGACAAATTCTCATGGCTCCTTTGCTCCAGAGGGAAATGACATCGCATATTTCTTCCCACCTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGAATGTATAGAGCCATCACTAGAAGCTTCTCCAACCCAAGATAATTTTCCTCATTAAATGAGATTGCATTCA

Function

NR:

description
uncharacterized protein LOC110529913 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936912.1 False 2377 mRNA 0.45 3 9606630 9609304
XR_005034856.1 True 2377 mRNA 0.45 3 9606630 9609304

Neighbor

gene id symbol gene type direction distance location
LOC118937346 LOC106574127 coding upstream 11389 9586463 ~ 9647813 (+)
LOC110522382 LOC106574127 coding upstream 34050 9564492 ~ 9572580 (+)
LOC110517099 LOC106574127 coding upstream 50852 9552260 ~ 9555778 (+)
LOC118966312 LOC106574127 coding upstream 55583 9544337 ~ 9551047 (+)
LOC118936861 LOC106574155 coding upstream 71631 9527471 ~ 9534999 (+)
LOC118937363 LOC106574127 coding downstream 4351 9613655 ~ 9623904 (+)
LOC118937339 LOC106574127 coding downstream 28439 9637743 ~ 9668473 (+)
LOC118937687 LOC106574127 coding downstream 49134 9658438 ~ 9664126 (+)
LOC118937070 LOC106574127 coding downstream 68490 9677794 ~ 9705942 (+)
LOC118937357 LOC106574127 coding downstream 87719 9676218 ~ 9726523 (+)
G8167 NA non-coding upstream 4152 9602023 ~ 9602478 (+)
G8157 NA non-coding upstream 32101 9573645 ~ 9574529 (+)
G8143 NA non-coding upstream 45451 9520787 ~ 9561179 (+)
G8142 NA non-coding upstream 49470 9516855 ~ 9557160 (+)
LOC110510917 LOC106574155 non-coding upstream 123056 9481039 ~ 9483610 (+)
G8176 NA non-coding downstream 79606 9688910 ~ 9690104 (+)
G8191 NA non-coding downstream 96892 9706196 ~ 9785562 (+)
G8200 NA non-coding downstream 162760 9772064 ~ 9933555 (+)
LOC118966784 LOC106574127 other upstream 146677 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1350752 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1376395 8229189 ~ 8231566 (+)
G6807 NA other upstream 1569476 8036617 ~ 8037154 (+)
G6518 NA other upstream 1720723 7885391 ~ 7885907 (+)
LOC110510920 LOC106574155 other downstream 374471 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 531940 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 1867360 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 3629309 13238613 ~ 13295452 (+)
G12410 NA other downstream 4019559 13617059 ~ 13666871 (+)

Expression


Co-expression Network