LOC110511657 (LOC106574155)


Basic Information

Item Value
gene id LOC110511657
gene name LOC106574155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9826009 ~ 9828460 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938257.1
TCCTGACAACCTCCGATCTGCTGttaggaaattgagaaaaataatTTCCACTGGGACCATCCACCTTTTCAGTCATGAATTTGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAGGAAGCTCTCCTCTCAGTTTCTCCAGATATTTGTTGAAGAGACAGTGAAGGGCTTCCTAAAACAGTGGTTAGATGAGTATGAAAATATCAACATTGATGTTTCAGTCCAGAATGAACCAAGCACCTCTACTTGCATGGTCTTTCCTATTCAGCTCAATCAGAGCAAGCCAGATGATAGTGACACAATGAATCAGCTCACGAAGGTCATGGTCAACAAAATTATGGATGCCTTATCAGTTGGCTCAAGTCATCAAATGATCACCAAAGCCAATGCCAAATGTTCTTTTGAGTCCggtaccagcatggccaccagtgACATTGTAGAAGGGATGTTGGATTTGGTAAGGGATAGCACCAGCAGTACTGGAGAGCAGATCCCCATCTTCAAGTCCAAGAAAAGCAAGAAAACCATGTTCAGCAAGATATGCTTTAACATAAAGGGTTCCAAGAAAGTTAGAAAGGACCACTGTCCTCAAAAGTCTATGGAGTACCAGCCGCAGAACACTTCCCCTACTGTGTACTTTACAGAGTCGAGGACAAATTCTCATGGCTCCTTTGCTCCAGAGGGAAATGACATCGCATATTCCTTCCCACCTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGAATGTATAGAGCCATCACTAGAAGCTTCTCCAACCTAAGATAATTTTCCTCATTAAATTAGATTGCATTCATTTGTTGTCATATattgactgttttgctagcacagactgtaaTATGTTCTGAGATTCATCCAcatgcattgaggagtataccacctcagtcacagaCTACATCAATAAGCGGATCGACAACGTCGtgcccacagtgaccgtatgtacatatcaccgacagaagccatggattacaggcaacatccacaccacgctaaaggctagagctgcttctttcaaggagcgggacactaatccagacacttatatgaaatcctgctatgccctcagactaaccatcaaacaggcaaagactATATCTATAAGCCTCATCCAAAGGAACGAAATTCTAAGTCGTCCGCATTGTTTCAGGCATCATCCGTTCCAAAGTCTCATCTTGttcactgtaaaaaataaaaataaaaactcaaaTAAGAGTTCCTTTTTGGACAATTCCAGGTTGTCCCTCCTTGTTTCAGTATGTTTAATCTGCCTAATGACCAGGATCCTGGTGTCTACCCAATGTGCTGAGCACTCCTCCTGGACAGAGTCCGCGCTACATTCAGCTGCTGCAACCATGGTCTCTGTGTGAAGGCACTGTTAGAGAGTCAATCAACCAGAACAAGGTTAGGAGACCAAATCTGTGTCCTAGCATtgtgaaatactgtatatgtaatggCCTCAATACATTAATGAAACGCCCTTAcattctatcctctccccatACTGAAACAACTTGTTAGGGTGAACCAATAAGACTGACACTATATACCTTCTAAGCATGATAGTTGGCTCATGATTTGTTTCAGGACTTGTTAGGGTAAACCtataacagcttctaaccccaagtcataagactgctgaacaattaatcaaatggccaccggacaagTTCAACTGttttattatttgttactttagtttattggTTAAATAttctcttaactcttcttgaactgcactgtttgttaagggcttgtaagtaaagtaTTTCACGGAaagatctacacttgttgtattcagcgcatgtgacaaataaagtttgatttgatttgactatgtACCTTCTAAGCATGATGGTTGGCTCATGATTTGTTTGTACTGAAATCTATTCAGGGAGGATAAGGCTATATCATaggcagtgatgtagtggtaaaaacaTTGACTGGTAAATGCTGATTGCCGTTCAGGATTAAAGAAGTAACGCTCCCTCTACTTTCAATGCATCTTCCACAAAAGGTGGGTAAATGCttgcacaaaa

Function

NR:

description
uncharacterized protein LOC110530383

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938257.1 True 2154 mRNA 0.42 3 9826009 9828460

Neighbor

gene id symbol gene type direction distance location
LOC118936500 LOC106574127 coding upstream 19365 9802456 ~ 9806644 (+)
LOC118966328 LOC106574127 coding upstream 23558 9799673 ~ 9802451 (+)
LOC118937415 LOC106574155 coding upstream 45842 9757938 ~ 9780167 (+)
LOC110510916 LOC106574155 coding upstream 69740 9741905 ~ 9756269 (+)
LOC118937403 LOC106574155 coding upstream 88209 9731004 ~ 9737800 (+)
LOC110515172 LOC106574127 coding downstream 9068 9837528 ~ 9845115 (+)
LOC118936775 LOC106574155 coding downstream 32692 9861152 ~ 9869107 (+)
LOC110510777 LOC106574127 coding downstream 50266 9878726 ~ 9889811 (+)
LOC118937372 LOC106574127 coding downstream 72401 9900861 ~ 9925501 (+)
LOC118937370 LOC106574127 coding downstream 88695 9917155 ~ 9924757 (+)
G8158 NA non-coding upstream 37834 9575836 ~ 9788175 (+)
G8191 NA non-coding upstream 40447 9706196 ~ 9785562 (+)
LOC118937357 LOC106574127 non-coding upstream 127466 9676218 ~ 9726523 (+)
G8176 NA non-coding upstream 135905 9688910 ~ 9690104 (+)
G8144 NA non-coding upstream 148528 9526496 ~ 9677481 (+)
G8225 NA non-coding downstream 30944 9859404 ~ 9915393 (+)
G8231 NA non-coding downstream 63957 9892417 ~ 9931446 (+)
G8238 NA non-coding downstream 99379 9927839 ~ 9947260 (+)
G8263 NA non-coding downstream 179550 10008010 ~ 10008505 (+)
LOC118966784 LOC106574127 other upstream 366056 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1570131 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1595774 8229189 ~ 8231566 (+)
G6807 NA other upstream 1788855 8036617 ~ 8037154 (+)
G6518 NA other upstream 1940102 7885391 ~ 7885907 (+)
LOC110510920 LOC106574155 other downstream 155315 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 312784 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 1648204 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 3410153 13238613 ~ 13295452 (+)
G12410 NA other downstream 3800403 13617059 ~ 13666871 (+)

Expression


Co-expression Network