LOC118937372 (LOC106574127)


Basic Information

Item Value
gene id LOC118937372
gene name LOC106574127
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9900861 ~ 9925501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936004.1
atttctacCAGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAAACACAGAAGAGGGGAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACATCAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCCTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGACTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaggaagaagtgCAGGAATCACAACTTAAATTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTTGTCACCTGTGTACAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTGTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACAAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATAAGCAAATACGAGAGCAGCTACAATATTAGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCGTTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGCGATGTGCCTTAAAgagcattgtcacatctgatgATAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAAACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGTGCTCAAAACTTCTTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAAGACTGCAATGTCAAAGGAGGACGCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagaaatttgTAGAGGGTGTTCTGGCTCAGCTTGGGGATATTGCCCATTCCAGGGCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACTAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCACAGCCTGCTTATTCTGTAGCATCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGAAACATTTGTGGAAGACCTGCAGAGCATGGCGCAACCTGcaaaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTACAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGACTTCATCATTCATCAGCGGAGGTCAGACATGCTGAGCAGAACGTCTAGTCATATACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGCACATTTGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGCTCTACTGACCAATAGTACCAAAGAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGGCATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACTAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGGATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCCGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATCTTTACATATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCGGCCATCTTGAGGTCAACCAGAGCAGTGTTAGACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTAAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccatctctctaacacCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAAATGGACAGGGTGCTTCTCATCTTGACGACCTCCGATCTGCTGttaggaaattgagaaaaataatTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGGTGGATAAAGTGATAGCCATTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGAAGCAGCCAAAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGGTACCATCAGCAGTACTGGAGAGCAGGTCCTCACCTTCAATACAAAGGGTTCCAAGAATGTTAGTAAGAACCTCTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttccCCTACTGTGTACTTTACAGAGACGATGACAACATCTCATGGCTCCTTTTCTCCAGAGGGAATTTATGATATCGCATCGTCCTTCCCATTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACGAAAGGCTTTCTCAGCACATTCAAATCTTCAAGGAAAACcaaattatttaaataaattCCTCATTATAACAACGAGAGCATTCATTTGTTCAGATGAGAATCtaatcgtattggtcacatacgccgAAAACAACTGTGAGATGCTTTAttacgagcccattcccaacaatgcagagttaaaaagtaagaaaatattttctaaatagtaacacaataacaataacaaggctatatacaaggagtaccagtaccgagtcaatgtgcatgggtgcgag
>TU10072
tttctaaatagtaacacaataacaataacaaggctatatacaaggagtaccagtaccgagtcaatgtgcgaggtagttgaggtaatacagtatgtacatgtaggtaagggtaaaagtgactaggcaatcaggatagataataaacacagtaGCAGCAGCTAGTGTGAAAGTcggtcagtgaatgtgtgggtagagtgtagTGAGTGTGCATCGAGCCAATTCAAGAGAGTCATTGGAAAACAATTAGAAAAATACATCAATaacaaagggggtcaatgcaaatagtgcaGGTGACCATTTAATTAacgttcagcagtctaatgacttgggggtagaagctgttcagcagtctgatgacttgggggtagaagctgttcagcagtctaatgacttgggggtagaagctgttcagcagtctaatgacttgagggtagaagctgttcagcagtctaatgacttgggggtagaagctgttcagcagtctaatgacttgggggtagaagctgttcagcagtctaatgacttgggggtagaagctgttcagcagtctaatgacttgggggtagaagctgttcagcagtctaatgacttgggggtagaagctgttcagaagtct

Function

NR:

description
xenotropic and polytropic retrovirus receptor 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936004.1 False 4701 mRNA 0.45 6 9900861 9907885
TU10072 True 616 lncRNA 0.40 2 9907806 9925501

Neighbor

gene id symbol gene type direction distance location
LOC110510777 LOC106574127 coding upstream 11050 9878726 ~ 9889811 (+)
LOC118936775 LOC106574155 coding upstream 31754 9861152 ~ 9869107 (+)
LOC110515172 LOC106574127 coding upstream 55746 9837528 ~ 9845115 (+)
LOC110511657 LOC106574155 coding upstream 72401 9826009 ~ 9828460 (+)
LOC110515163 LOC106574155 coding upstream 74593 9819217 ~ 9826268 (+)
LOC118937370 LOC106574127 coding downstream 9270 9917155 ~ 9924757 (+)
LOC118966382 LOC106574155 coding downstream 29280 9937165 ~ 9945082 (+)
LOC118937321 LOC106574127 coding downstream 48793 9956678 ~ 9964323 (+)
LOC110510920 LOC106574155 coding downstream 72642 9980527 ~ 9991542 (+)
LOC110533060 gnb4 coding downstream 104816 10012701 ~ 10048677 (+)
G8158 NA non-coding upstream 112686 9575836 ~ 9788175 (+)
G8191 NA non-coding upstream 115299 9706196 ~ 9785562 (+)
LOC118937357 LOC106574127 non-coding upstream 202318 9676218 ~ 9726523 (+)
G8176 NA non-coding upstream 210757 9688910 ~ 9690104 (+)
G8144 NA non-coding upstream 223380 9526496 ~ 9677481 (+)
G8238 NA non-coding downstream 19954 9927839 ~ 9947260 (+)
G8263 NA non-coding downstream 100125 10008010 ~ 10008505 (+)
G8264 NA non-coding downstream 101135 10009020 ~ 10009350 (+)
G8265 NA non-coding downstream 103131 10011016 ~ 10011230 (+)
G8266 NA non-coding downstream 103965 10011850 ~ 10012067 (+)
LOC118966784 LOC106574127 other upstream 440908 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1644983 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1670626 8229189 ~ 8231566 (+)
G6807 NA other upstream 1863707 8036617 ~ 8037154 (+)
G6518 NA other upstream 2014954 7885391 ~ 7885907 (+)
gipc3 LOC106574151 other downstream 233359 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 1568779 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 3330728 13238613 ~ 13295452 (+)
G12410 NA other downstream 3720978 13617059 ~ 13666871 (+)
ftsj3 ftsj3 coding downstream 161799 10087300 ~ 10096757 (+)

Expression


Co-expression Network