LOC118937370 (LOC106574127)


Basic Information

Item Value
gene id LOC118937370
gene name LOC106574127
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9917155 ~ 9924757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935940.1
AAATATGAGAACCGGTCACGAATGCGGAGCCACGCCCTAAAATAACATGTGACCACAAGGCGTTTGTGACGCATTCATGCGTTCCAACTTTGTCataattgtctgtaggttctaaaTTGCTTATGAGCTTGGCTTCCCTTCAGAAAGTAGCTGATTCTTGTACTTTACAGCTGTATTTTCCTACAGTTACTAATAATACTAGCAACAAAACAGATTTCATTCCTTAAAATGATATTGCCAGATGGAAGAAAATAATAAGGTAGGCCTAAACTGTAATAAGATATACCTTAAAGACTGCTTGTGTTTAATCCTGAATCCAGTTGCCCCTCTTGTACTGGGATAAAACAATAGGCAAGCCATGAACCTTATGGAGGAGTACATGTGTTTTGTAGACACACCTGGGTTCTAGACTGGCTGAGGTAAACATTTTAGGAAAGCCTGGGTTTTTAATATCGAAGTCATTCTAAGGGGTAGGTTTGACAAAGcaaatgagtgagtgagtcttTGACATGAAGACAGTGGTTAGATTCTGCCATTGGGACTGCTCTGATGTTTCCATTCTCTCCTGGTTATGACCATAGAGCCATGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGAAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCTTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGACTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTATGGAGCAGGAAGAGGAACAAGAACAGGAATCACAACTTAAGTTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTTGTCACCTGTGTACAGGACAGCCTGCAAGATTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTACAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTGTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACAAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATAAGCAAATACGAGAGCAGCTACAATATTAGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAACAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCGTCCAAAACAACTTGAAAGATTATTTCAGCAAGCTTCAGCGATGTGCCTTAAAgagcattgtcacatctgatgACAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAAACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGCAGTTACTTTACAAAGAGGCCTAAGTGAGAGCTCAAAACTTCTTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagacatttgtAGAGGGTGTTCTGGCTCAGCTTGGGGATATCTCCCATTCCAGGTCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCACAGCCTGCTTATTCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGACACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTACAGAGTAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGACTTCATCATTCACCAGCGGAGGTCAgacatgcagagaagaatgtctaGTCATATACCCACAGAGGACTCTGGAAATCTTGGGACTAAGGAGTACCTTGGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACAGAAACAGACGAGGTTCTACTGACCAATAGTACCAAAGAGGTAATTTCAACAATCTTGACCTCATGCGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTTCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATCTTTACATATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCGGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCacgctcctccatctctctaacacCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAAATGGACAGGGTGCTTCTCATCCTGACAACCTCCGATCTGCTGttaggaaattgagaaaaatcaTTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGAAGCAGCCAAAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAATGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCCTCACCTTCAATACAAAGGGTTCCAAGAAAGTTAGTAAGAACCTCTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttccCCTACTGTGTACTTTACAGAGACGATGACAACATCTCATGGCTCCTTTTCTCCAGAGGGAATTTATGATATCGCATCGTCCTTCCCACTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACGAAAGGCTTTCTCAGCACATTCAAATCTTCAAGGAAAACcaaattatttaaataaattCCTCATTATAA

Function

NR:

description
uncharacterized protein LOC110529913 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935940.1 True 5093 mRNA 0.45 7 9917155 9924757

Neighbor

gene id symbol gene type direction distance location
LOC118937372 LOC106574127 coding upstream 9270 9900861 ~ 9925501 (+)
LOC110510777 LOC106574127 coding upstream 27344 9878726 ~ 9889811 (+)
LOC118936775 LOC106574155 coding upstream 48048 9861152 ~ 9869107 (+)
LOC110515172 LOC106574127 coding upstream 72040 9837528 ~ 9845115 (+)
LOC110511657 LOC106574155 coding upstream 88695 9826009 ~ 9828460 (+)
LOC118966382 LOC106574155 coding downstream 12408 9937165 ~ 9945082 (+)
LOC118937321 LOC106574127 coding downstream 31921 9956678 ~ 9964323 (+)
LOC110510920 LOC106574155 coding downstream 55770 9980527 ~ 9991542 (+)
LOC110533060 gnb4 coding downstream 87944 10012701 ~ 10048677 (+)
ftsj3 ftsj3 coding downstream 162543 10087300 ~ 10096757 (+)
G8225 NA non-coding upstream 1762 9859404 ~ 9915393 (+)
G8158 NA non-coding upstream 128980 9575836 ~ 9788175 (+)
G8191 NA non-coding upstream 131593 9706196 ~ 9785562 (+)
LOC118937357 LOC106574127 non-coding upstream 218612 9676218 ~ 9726523 (+)
G8176 NA non-coding upstream 227051 9688910 ~ 9690104 (+)
G8238 NA non-coding downstream 3082 9927839 ~ 9947260 (+)
G8263 NA non-coding downstream 83253 10008010 ~ 10008505 (+)
G8264 NA non-coding downstream 84263 10009020 ~ 10009350 (+)
G8265 NA non-coding downstream 86259 10011016 ~ 10011230 (+)
G8266 NA non-coding downstream 87093 10011850 ~ 10012067 (+)
LOC118966784 LOC106574127 other upstream 457202 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1661277 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1686920 8229189 ~ 8231566 (+)
G6807 NA other upstream 1880001 8036617 ~ 8037154 (+)
G6518 NA other upstream 2031248 7885391 ~ 7885907 (+)
gipc3 LOC106574151 other downstream 216487 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 1551907 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 3313856 13238613 ~ 13295452 (+)
G12410 NA other downstream 3704106 13617059 ~ 13666871 (+)

Expression


Co-expression Network