LOC110534079 (LOC106574089)


Basic Information

Item Value
gene id LOC110534079
gene name LOC106574089
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11664608 ~ 11666692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618773.1
CCGCGTGTCCCTCGCACTGATTGGTAGAAAGTTACTGTGGGAAAGAAAGTTTTGGAAGTTTCACACGAGCCGTTCGCGTGCAGTCCTAGATATAAATAAGACCAGCAAGAAGCGCCACAGACGCAGCGTCCGCTGGCAGACAGTGATTTCTCGATTCCGTGACATCGTTCAGCTTGCGACTGACTTGGGGACGCTTGTCTCTCGCACAGAGGTGCGCTACCACCTAAAAAGGATTTTGTTTTTCCGGAATTTGGAATTTCATAAGAGGGTACTGTGAATAGGTGCCGACTACTTGTCAATAACCACCAACAGTGGACTGTAATACCGAGTTGCCGTTGCTCTTGTGGGAAATTTCAGACAGACCGAAGATGCCTGCCGATATAATGGAAAAGACATCAGTCTCTCCTGTTGCTGCTACTACAGCCAGCATGAACACAACACCTGATAAACCCAAGACGGCTTCCGAGCACAGGAAGTCATCCAAACCTATCatggagaaaaggagaagagccAGAATCAACGAAAGCTTGGGACAGTTGAAAACTCTTATCCTGGATGCGCTCAAAAAAGATAGTTCCAGACACTCGAAACTTGAAAAGGCGGATATCCTGGAGATGACCGTAAAACATCTCCGGAACCTCCAGAGAGCTCAGATGACTGcTGCTTTGAACTCTGATCCCACCGTGCTAGGGAAATACACAGCTGGATTCAGCGAGTGCACAAATGAAGTCACCCGGTTCCTGTCCACCTGCGAAGGGGTTAACACCGAGGTCAGGACGCGGCTTCTCGGTCACTTGGCCAGCTGCATGACGCAGATCAACGCTATGAACTACCCCACGCAGCACCAGATCCCTACCGGGCCTCCCCACCGCGCCTTCGGCCAGTCCATGGTACATATCCCCAACTCATCTCCACAGGGCAACGTGATGCCCCTGCCTTGTAAAGGTGGCTCTCCCCAGAGCATGTCACCAGAAACAACAAAAGTATACGGCGGCTTCCACCTCGTACCTGCCACAGATGGACAATTCGCCTTCCTTATCCCCAATGCAGCTTTTACGCCCAACGGTCCCGTTATCCCCGTGTACGCGAACCAGGTCAACACGCCTGTCCCAGCAGCGGTGTCCCCCGGTGCACCGACAGGCAACTCGGACTCAGTGTGGCGACCCTGGTAGAACAAAAAAAAGGACCTATCGAAAATACTTTTTATAATGACACTTAGTTCTTCTATGTTTGATGTTACATTAATGATGTTTGGATTCTGTTTTTGTATTTTCAACGTGTTAAGATGAAAAGATGATGCACTATATTTGTATAGCCTATATGGGAGTGAAGTTCATATTGAAATTAGATTTTTGTATTGTTGAAGTCTGTTCACTGCATTTTTATATTCGAGGTGTCTTTTTTTTATTGCGCGATACCAAAGATATGTTGAATGCACTTTACGTTattcttcattttggaagaaaaatAAATTTGTAAAGATATTGAAAAACA

Function

NR:

description
transcription factor HES-1-like

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001757 somite specification biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K06054 HES1; hairy and enhancer of split 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618773.1 True 1494 mRNA 0.47 4 11664608 11666692

Neighbor

gene id symbol gene type direction distance location
LOC110523899 LOC106574090 coding upstream 150181 11433102 ~ 11514427 (+)
gipc3 LOC106574151 coding upstream 1501660 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 1556720 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 1562971 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 1567851 10087300 ~ 10096757 (+)
ccdc50 ccd50 coding downstream 179027 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 236999 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 255884 11922576 ~ 12025076 (+)
cpox LOC106573996 coding downstream 371033 12037725 ~ 12043817 (+)
LOC110535080 LOC106574000 coding downstream 390116 12056808 ~ 12072687 (+)
G10348 NA non-coding upstream 14550 11649789 ~ 11650058 (+)
G10342 NA non-coding upstream 18866 11644951 ~ 11645742 (+)
G10328 NA non-coding upstream 32028 11632280 ~ 11632580 (+)
G10317 NA non-coding upstream 38298 11626095 ~ 11626310 (+)
G10313 NA non-coding upstream 43042 11621292 ~ 11621566 (+)
G10381 NA non-coding downstream 24787 11691479 ~ 11691832 (+)
G10414 NA non-coding downstream 64333 11731025 ~ 11731290 (+)
G10441 NA non-coding downstream 102120 11768812 ~ 11769119 (+)
G10446 NA non-coding downstream 110518 11777210 ~ 11777560 (+)
G10452 NA non-coding downstream 121748 11788440 ~ 11788748 (+)
LOC110510920 LOC106574155 other upstream 1673066 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2204655 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3408730 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1571921 13238613 ~ 13295452 (+)
G12410 NA other downstream 1962171 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2525764 14192456 ~ 14214939 (+)
G13380 NA other downstream 3012658 14679350 ~ 14679578 (+)
G13381 NA other downstream 3013006 14679698 ~ 14680027 (+)

Expression


Co-expression Network