LOC110535183 (LOC106574001)


Basic Information

Item Value
gene id LOC110535183
gene name LOC106574001
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12115086 ~ 12147336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620082.2
AGCGGTACTTTCATGAAAGCTGGTTGCGGATACGTAACCTCACCCATTAAACTTTTAGTCGTGAACGCGGCGCAGGCATCTCTGTGCTTTGACAAATTGGGTTTTCTATACTTGACATTACATTTGTTTTAATCCACTATCTGCACAGAAAAGTCCTAAAATAAGGAGGATATTACACTGAAACAGGTAACATTTGAAGAGGGCTCTGTTAATTTGTCAGCGTGGCGTGAACATGACTGAGGTAGCACAAAATATTGCTGATGTCGCACACGACATGACTGATGTGGCACATGATATGTGTGATGAAGCACACAAAATGAGTGATAAAGAGAACAACGACAACATGAACGAGTTGCATGGCCATGTGGCACACAAAGAGGATGATGTGGAACACGACAAGCATGATTTGGCACACAAAGACAATGAGGCATACAAAAATGACGATGTGTCCCATGACGAACATGATGAGGCACAAGAAAAGAATGAGGCGTACAGCGACAATGAGGAAGAAGTTCACACCGAAGAGGATGAGGTTCACACAGAGcccgaggaagaggaggaggaagaagatgagGCACACGACAGGAATGATGTGGAGCACAAAGAAAATTATACAGTTAAGGACAAGGCAAGGCAAAGTTCAAGATCCAGGAAGGACAAGAACAATGTGGCACAAAATGGAGTGGCGCATGACATGAACGATGAGTCAGAGAAAGAAGAGAATGACCAGTCACAGAACGTATCTGAGGTGGCTCTGAAACAAAAGAGACTTCTGCGCTCCAAAAAGCCGGTGGCCAGGAGCTACGTGCCCCAGATCGGTAAGGCTGACGTGAAGAACAAGTTTGAGGCCATGCAGAAGGCCAGGGAGGAGCGCAACAGTAGGAGGAGCCTAGAGGAGCACCAGAAAAGGAAGGAGCAGTACGTCAAGGAGAGAGAATACAACCGCAGGAAGCAACAGATAAAAGAACTACTTGCCTccagtgatgaggaggaggaggtgaagccGGCCAAGGTAGAGAAATCCTACGTCCCCAAGATCACAGGCAGTGTGAAGGGGAAGTTTGCCGAGATGGAGAAGCAGagacaagaggaggagaggaagcggatggaggaggagaggaagaagcgcGCCGCCCAGGACATCATGGAGAAAGCGAAGATGCAGAAGGAGCTGGCCAAGAAAGCCGCAGAGGAGGGAGATGACACCATCCTGGTCCGTGTGGTGCCGGCAAAGCTGTCACGACCTCCAGGCAGGATCAAGATGAACTTTGAGGACCTGGAAAAGAACCGCGAGGAAGAGcagaagaagaggacagaggaggagaagaagaagcgcTACAACGAGAACAGGCTCTCCTTCCGCGAGGCCAAGCGGAGCTCGGTCGTCCAGGATGAGGACGAGGAACAGCCCACAGAGAAGGAGCAGGTGACTCCTGGGAAGCTAAAAATGACGTTTGAGGAggctgagaaggagaggcaggaatGCCTGAGAaagcaggcagagagggaggctaAACGTCGTCTGCAGGACGAGAAGAAAGCCTTTGAGGAGGCCAAGCTGGAAATGggagaagatgaggaggactCACAAGGAGCTCAAGGCGAGAGAGACGTCATCCAGCCTGGTAAACTGAGGTTGAGCTTCGAGGAGCTTGAGAAACAGAGGGTAGAGAATGAACGCAAAGCAGCAGAGGTTGAATACAAGAGAcgaatggaagaggagaggaaggctttCGCCGAGGCCAGGAAAAGCATGATAGTGGATGACGATGACGAGGTGTTGATGGCCATGCTGAACCTGGAGGGCAGCAAGCCAGGGAAGCTGTGTGTCAGCTTCGAGGACAAGGAGCGTCAGAGGAGAGAGGCGGAGGAGAAGAAAGCAGAGGAGGAGGCCAagaggaggctggaggaggagaagaggctcTTCGCAGAAGCCCGCAAGAATATGGTGCTAGATGAGGACGAGGACGGAATGGTCAAGAGCGACTCCCAGGAAGCATTGCACCCTGGAAAACTGGAGATGAACTTTGAAGAGCTGCTAAAGCAGAAGGAGGAAGCCGATAGGAGGTGCAAAGTGGCGGCGCGCAAGAAGAAAATGGAGCAGGAGAAACAGGAGTTTGAACAGCTCAGACAAGAGATGGGAGAGGATGTGGTGAATGAGAGCTCTGATACAGTAAGTAAGGAGTATGAGGAGCTGAAGAAACTCAAGAGGACCGGCTCCATCCAGGCCAAGAACCTCAAGTCCAAGTTTGAAAAGATCAAGCAGTTGAAAGACGAGGAGgtccagaagaagattgaggaTGTGAGAGCAAAGAGAAAGGCTGTAGATGAGGAAATcaaagagagggaagaagagaggattcAGGAGGATGATGATGAAGGCAAAAAGGACACAGAGAAAGGGGCTGAGGAGGCTCCGTTCAGACAAAAGGTGGACATGCGCGCACGGTTTGAACAAATGGCCAgagccagagaggaggaggagaagaagagggtggACGAACAGAAGCTTCAGAGGATGCAGTTCGAACAGCAAGAGATTGACGCCGCTCTCCAAAAAAAAAGGgacgatgaggaggaggaagagggaagcaTCATCAATAGCTCGGCAGCctatgaggatgaggaggaccaCGCCAGGTCGGGGGCTCCGTGGTTTAAGAAGCCCCTGAAGAACCAATCGGTGGTGGATGCCGAGCCAGTGCGGTTCACGGTGAAGATCACCGGGGAGCCCAAGCCGGAGGTGACCTGGTGGTTTGAGGGGGAGATGCTCCAGGACTGTGAAGACTATCAgtacatagagagaggagagacattctGCCTCTACCTGCCAGAGACCTTCCCAGAGGACGAGGGAGAGTACATGTGCAAGGCTGTCAACAGCAGAGGCACCGCCGCCAGCACCTGTATCCTAACGATAGAAAGTAAGCAATCTTCCATCTGACTGTCACTACATGTC
>XM_021620238.2
AGCGGTACTTTCATGAAAGCTGGTTGCGGATACGTAACCTCACCCATTAAACTTTTAGTCGTGAACGCGGCGCAGGCATCTCTGTGCTTTGACAAATTGGGTTTTCTATACTTGACATTACATTTGTTTTAATCCACTATCTGCACAGAAAAGTCCTAAAATAAGGAGGATATTACACTGAAACAGGTAACATTTGAAGAGGGCTCTGTTAATTTGTCAGCGTGGCGTGAACATGACTGAGGTAGCACAAAATATTGCTGATGTCGCACACGACATGACTGATGTGGCACATGATATGTGTGATGAAGCACACAAAATGAGTGATAAAGAGAACAACGACAACATGAACGAGTTGCATGGCCATGTGGCACACAAAGAGGATGATGTGGAACACGACAAGCATGATTTGGCACACAAAGACAATGAGGCATACAAAAATGACGATGTGTCCCATGACGAACATGATGAGGCACAAGAAAAGAATGAGGCGTACAGCGACAATGAGGAAGAAGTTCACACCGAAGAGGATGAGGTTCACACAGAGcccgaggaagaggaggaggaagaagatgagGCACACGACAGGAATGATGTGGAGCACAAAGAAAATTATACAGTTAAGGACAAGGCAAGGCAAAGTTCAAGATCCAGGAAGGACAAGAACAATGTGGCACAAAATGGAGTGGCGCATGACATGAACGATGAGTCAGAGAAAGAAGAGAATGACCAGTCACAGAACGTATCTGAGGTGGCTCTGAAACAAAAGAGACTTCTGCGCTCCAAAAAGCCGGTGGCCAGGAGCTACGTGCCCCAGATCGGTAAGGCTGACGTGAAGAACAAGTTTGAGGCCATGCAGAAGGCCAGGGAGGAGCGCAACAGTAGGAGGAGCCTAGAGGAGCACCAGAAAAGGAAGGAGCAGTACGTCAAGGAGAGAGAATACAACCGCAGGAAGCAACAGATAAAAGAACTACTTGCCTccagtgatgaggaggaggaggtgaagccGGCCAAGGTAGAGAAATCCTACGTCCCCAAGATCACAGGCAGTGTGAAGGGGAAGTTTGCCGAGATGGAGAAGCAGagacaagaggaggagaggaagcggatggaggaggagaggaagaagcgcGCCGCCCAGGACATCATGGAGAAAGCGAAGATGCAGAAGGAGCTGGCCAAGAAAGCCGCAGAGGAGGGAGATGACACCATCCTGGTCCGTGTGGTGCCGGCAAAGCTGTCACGACCTCCAGGCAGGATCAAGATGAACTTTGAGGACCTGGAAAAGAACCGCGAGGAAGAGcagaagaagaggacagaggaggagaagaagaagcgcTACAACGAGAACAGGCTCTCCTTCCGCGAGGCCAAGCGGAGCTCGGTCGTCCAGGATGAGGACGAGGAACAGCCCACAGAGAAGGAGCAGGTGACTCCTGGGAAGCTAAAAATGACGTTTGAGGAggctgagaaggagaggcaggaatGCCTGAGAaagcaggcagagagggaggctaAACGTCGTCTGCAGGACGAGAAGAAAGCCTTTGAGGAGGCCAAGCTGGAAATGggagaagatgaggaggactCACAAGGAGCTCAAGGCGAGAGAGACGTCATCCAGCCTGGTAAACTGAGGTTGAGCTTCGAGGAGCTTGAGAAACAGAGGGTAGAGAATGAACGCAAAGCAGCAGAGGTTGAATACAAGAGAcgaatggaagaggagaggaaggctttCGCCGAGGCCAGGAAAAGCATGATAGTGGATGACGATGACGAGGTGTTGATGGCCATGCTGAACCTGGAGGGCAGCAAGCCAGGGAAGCTGTGTGTCAGCTTCGAGGACAAGGAGCGTCAGAGGAGAGAGGCGGAGGAGAAGAAAGCAGAGGAGGAGGCCAagaggaggctggaggaggagaagaggctcTTCGCAGAAGCCCGCAAGAATATGGTGCTAGATGAGGACGAGGACGGAATGGTCAAGAGCGACTCCCAGGAAGCATTGCACCCTGGAAAACTGGAGATGAACTTTGAAGAGCTGCTAAAGCAGAAGGAGGAAGCCGATAGGAGGTGCAAAGTGGCGGCGCGCAAGAAGAAAATGGAGCAGGAGAAACAGGAGTTTGAACAGCTCAGACAAGAGATGGGAGAGGATGTGGTGAATGAGAGCTCTGATACAGTAAGTAAGGAGTATGAGGAGCTGAAGAAACTCAAGAGGACCGGCTCCATCCAGGCCAAGAACCTCAAGTCCAAGTTTGAAAAGATCAAGCAGTTGAAAGACGAGGAGgtccagaagaagattgaggaTGTGAGAGCAAAGAGAAAGGCTGTAGATGAGGAAATcaaagagagggaagaagagaggattcAGGAGGATGATGATGAAGGCAAAAAGGACACAGAGAAAGGGGCTGAGGAGGCTCCGTTCAGACAAAAGGTGGACATGCGCGCACGGTTTGAACAAATGGCCAgagccagagaggaggaggagaagaagagggtggACGAACAGAAGCTTCAGAGGATGCAGTTCGAACAGCAAGAGATTGACGCCGCTCTCCAAAAAAAAAGGgacgatgaggaggaggaagagggaagcaTCATCAATAGCTCGGCAGCctatgaggatgaggaggaccaCGCCAGGTCGGGGGCTCCGTGGTTTAAGAAGCCCCTGAAGAACCAATCGGTGGTGGATGCCGAGCCAGTGCGGTTCACGGTGAAGATCACCGGGGAGCCCAAGCCGGAGGTGACCTGGTGGTTTGAGGGGGAGATGCTCCAGGACTGTGAAGACTATCAgtacatagagagaggagagacattctGCCTCTACCTGCCAGAGACCTTCCCAGAGGACGAGGGAGAGTACATGTGCAAGGCTGTCAACAGCAGAGGCACCGCCGCCAGCACCTGTATCCTAACGATAGAAACTGATGACTACTGATGCTCTACTTTTTTTGGaactttccctgtctctctcactccttttGTAAAACGTCATCCCTCGTGGTAGGGCCAAAAAGAGGAGGAAACAGCATTATGCTCTCCATTCCGTCTCGGGATACACAcaacatgaaaagtgcaatattgTGTTGTTTACGTATTGCTCATCATTCATCAATAAAGCTGCACTCCCTTTCAGTATTACGTTTAGGATGAAATCTGTGCCAAATCACATATTGATCCCCTGAGTGATTGCTGTCACAAATGATGTTCAGATTGATTTTGTGATCATATAACATCATATATCAAGGCTGTTCAACTCTGATCCTGGAGGGCTGAAACGCTTCTGgttttcatcctctccttctaatCAGGGACTAATTCAGActtgggacaccaggtgagtgcaattaacTGCTAGGTAGaaacaaaaaactgaaatgttttggcattccAGGGCCGGAATTGAATAACACTGTCATAAATCATAACATCTTTGCATCAGGGAAAGTATCCCTTCAAAGGTAACATTTCAGAAAGTTCCATTTGAGAATATGGTGCAACCCAATTTAAAGCCTAATGAAATACCTGTAAAATAGACACAGCAGTATGCATTGCACAGTTAATTTGCAGAATTGGTTACTAATAAAATAATGATCTAATTAGgattttttgtttcttttcatttttaatatttTAATAATTATCTGAAAGGTTTGGTTGTAATGTACACTTAGATTTTTCATATCCCAAAAGTATTTTTCACATTGAGTTAAAGTACAACTCTACAGGAAATTGATTATATAATTGTCTTGGACACTGTTGTATGGCTTGAAATACAGTATAGTGACATGTTTGTGATATGTTTATTTAAAGTTTTAATAAAAAGTGCTAAATACGA
>XM_021620159.2
CAACGCAGCTGTTCATCAGGTAACATTTGAAGAGGGCTCTGTTAATTTGTCAGCGTGGCGTGAACATGACTGAGGTAGCACAAAATATTGCTGATGTCGCACACGACATGACTGATGTGGCACATGATATGTGTGATGAAGCACACAAAATGAGTGATAAAGAGAACAACGACAACATGAACGAGTTGCATGGCCATGTGGCACACAAAGAGGATGATGTGGAACACGACAAGCATGATTTGGCACACAAAGACAATGAGGCATACAAAAATGACGATGTGTCCCATGACGAACATGATGAGGCACAAGAAAAGAATGAGGCGTACAGCGACAATGAGGAAGAAGTTCACACCGAAGAGGATGAGGTTCACACAGAGcccgaggaagaggaggaggaagaagatgagGCACACGACAGGAATGATGTGGAGCACAAAGAAAATTATACAGTTAAGGACAAGGCAAGGCAAAGTTCAAGATCCAGGAAGGACAAGAACAATGTGGCACAAAATGGAGTGGCGCATGACATGAACGATGAGTCAGAGAAAGAAGAGAATGACCAGTCACAGAACGTATCTGAGGTGGCTCTGAAACAAAAGAGACTTCTGCGCTCCAAAAAGCCGGTGGCCAGGAGCTACGTGCCCCAGATCGGTAAGGCTGACGTGAAGAACAAGTTTGAGGCCATGCAGAAGGCCAGGGAGGAGCGCAACAGTAGGAGGAGCCTAGAGGAGCACCAGAAAAGGAAGGAGCAGTACGTCAAGGAGAGAGAATACAACCGCAGGAAGCAACAGATAAAAGAACTACTTGCCTccagtgatgaggaggaggaggtgaagccGGCCAAGGTAGAGAAATCCTACGTCCCCAAGATCACAGGCAGTGTGAAGGGGAAGTTTGCCGAGATGGAGAAGCAGagacaagaggaggagaggaagcggatggaggaggagaggaagaagcgcGCCGCCCAGGACATCATGGAGAAAGCGAAGATGCAGAAGGAGCTGGCCAAGAAAGCCGCAGAGGAGGGAGATGACACCATCCTGGTCCGTGTGGTGCCGGCAAAGCTGTCACGACCTCCAGGCAGGATCAAGATGAACTTTGAGGACCTGGAAAAGAACCGCGAGGAAGAGcagaagaagaggacagaggaggagaagaagaagcgcTACAACGAGAACAGGCTCTCCTTCCGCGAGGCCAAGCGGAGCTCGGTCGTCCAGGATGAGGACGAGGAACAGCCCACAGAGAAGGAGCAGGTGACTCCTGGGAAGCTAAAAATGACGTTTGAGGAggctgagaaggagaggcaggaatGCCTGAGAaagcaggcagagagggaggctaAACGTCGTCTGCAGGACGAGAAGAAAGCCTTTGAGGAGGCCAAGCTGGAAATGggagaagatgaggaggactCACAAGGAGCTCAAGGCGAGAGAGACGTCATCCAGCCTGGTAAACTGAGGTTGAGCTTCGAGGAGCTTGAGAAACAGAGGGTAGAGAATGAACGCAAAGCAGCAGAGGTTGAATACAAGAGAcgaatggaagaggagaggaaggctttCGCCGAGGCCAGGAAAAGCATGATAGTGGATGACGATGACGAGGTGTTGATGGCCATGCTGAACCTGGAGGGCAGCAAGCCAGGGAAGCTGTGTGTCAGCTTCGAGGACAAGGAGCGTCAGAGGAGAGAGGCGGAGGAGAAGAAAGCAGAGGAGGAGGCCAagaggaggctggaggaggagaagaggctcTTCGCAGAAGCCCGCAAGAATATGGTGCTAGATGAGGACGAGGACGGAATGGTCAAGAGCGACTCCCAGGAAGCATTGCACCCTGGAAAACTGGAGATGAACTTTGAAGAGCTGCTAAAGCAGAAGGAGGAAGCCGATAGGAGGTGCAAAGTGGCGGCGCGCAAGAAGAAAATGGAGCAGGAGAAACAGGAGTTTGAACAGCTCAGACAAGAGATGGGAGAGGATGTGGTGAATGAGAGCTCTGATACAGTAAGTAAGGAGTATGAGGAGCTGAAGAAACTCAAGAGGACCGGCTCCATCCAGGCCAAGAACCTCAAGTCCAAGTTTGAAAAGATCAAGCAGTTGAAAGACGAGGAGgtccagaagaagattgaggaTGTGAGAGCAAAGAGAAAGGCTGTAGATGAGGAAATcaaagagagggaagaagagaggattcAGGAGGATGATGATGAAGGCAAAAAGGACACAGAGAAAGGGGCTGAGGAGGCTCCGTTCAGACAAAAGGTGGACATGCGCGCACGGTTTGAACAAATGGCCAgagccagagaggaggaggagaagaagagggtggACGAACAGAAGCTTCAGAGGATGCAGTTCGAACAGCAAGAGATTGACGCCGCTCTCCAAAAAAAAAGGgacgatgaggaggaggaagagggaagcaTCATCAATAGCTCGGCAGCctatgaggatgaggaggaccaCGCCAGGTCGGGGGCTCCGTGGTTTAAGAAGCCCCTGAAGAACCAATCGGTGGTGGATGCCGAGCCAGTGCGGTTCACGGTGAAGATCACCGGGGAGCCCAAGCCGGAGGTGACCTGGTGGTTTGAGGGGGAGATGCTCCAGGACTGTGAAGACTATCAgtacatagagagaggagagacattctGCCTCTACCTGCCAGAGACCTTCCCAGAGGACGAGGGAGAGTACATGTGCAAGGCTGTCAACAGCAGAGGCACCGCCGCCAGCACCTGTATCCTAACGATAGAAAGTAAGCAATCTTCCATCTGACTGTCACTACATGTC

Function

NR:

description
nexilin-like isoform X1

GO: NA

KEGG:

id description
K23918 NEXN; nexilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620082.2 False 2959 mRNA 0.51 13 12115086 12146128
XM_021620238.2 False 3838 mRNA 0.48 14 12115086 12147336
XM_021620159.2 True 2792 mRNA 0.52 13 12118830 12146128

Neighbor

gene id symbol gene type direction distance location
LOC110535080 LOC106574000 coding upstream 42399 12056808 ~ 12072687 (+)
cpox LOC106573996 coding upstream 71269 12037725 ~ 12043817 (+)
LOC110534688 LOC106573995 coding upstream 90010 11922576 ~ 12025076 (+)
LOC110534540 LOC106574080 coding upstream 208373 11903691 ~ 11906713 (+)
ccdc50 ccd50 coding upstream 235820 11845719 ~ 11879266 (+)
mindy4 fam188b coding downstream 7086 12154422 ~ 12165172 (+)
LOC110535487 NA coding downstream 102833 12250169 ~ 12253531 (+)
LOC110525067 LOC106574005 coding downstream 110632 12257968 ~ 12312639 (+)
armh1 cssa16h1orf228 coding downstream 314031 12460957 ~ 12473058 (+)
LOC110536107 LOC106574012 coding downstream 337350 12484686 ~ 12496762 (+)
G10596 NA non-coding upstream 16731 12036546 ~ 12098355 (+)
G10618 LOC106573999 non-coding upstream 30583 12083583 ~ 12084503 (+)
G10600 NA non-coding upstream 33340 12078158 ~ 12081746 (+)
G10598 NA non-coding upstream 66178 12046142 ~ 12048908 (+)
G10521 NA non-coding upstream 213122 11901734 ~ 11901964 (+)
G10657 NA non-coding downstream 18518 12165854 ~ 12166761 (+)
G10691 NA non-coding downstream 64407 12211743 ~ 12213285 (+)
G10692 LOC100380853 non-coding downstream 70020 12217356 ~ 12217585 (+)
G11015 NA non-coding downstream 165387 12312723 ~ 12318190 (+)
G11089 NA non-coding downstream 194671 12342007 ~ 12342286 (+)
LOC110523899 LOC106574090 other upstream 600704 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 1953800 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2123544 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2655133 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3859208 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1091277 13238613 ~ 13295452 (+)
G12410 NA other downstream 1481527 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2045120 14192456 ~ 14214939 (+)
G13380 NA other downstream 2532014 14679350 ~ 14679578 (+)
G13381 NA other downstream 2532362 14679698 ~ 14680027 (+)

Expression


Co-expression Network