armh1 (cssa16h1orf228)


Basic Information

Item Value
gene id armh1
gene name cssa16h1orf228
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12460957 ~ 12473058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621168.2
AGAGAACTGGTCTGAGTAGCACGGGTAGGCCTGGACCACACTACTGTTGACTGGGATTTAGACTCAGCCAACAGTGAAATCCTGGACATGGAATCTATACTCCCCTTCACACATCAGGACAACCTTGTGGAGGACATCTTCTGACAGTACTAGCAAACCACAGTTGACCAATTCCCTTCCCAAAAAGGCGGACTTTTTCTAGTTCTATGGCGCACTGTACCAGGTGGGAGGAGGCAACGCTGCTAAGCAACACACAACTCGAGACAGCTGTGATTTCCAGCTTGTCGTTTTGGCAGTATACTAACAGCAGTGTCAAAAGCAGTAATGTCCACAAGTAAGGAACAAGCAGCTATCAGTAAAGTTCTGAGTTTCCTTCAAGAGTGGGATCATGGCAACAAGACGGTGCGCAGCCGCATGCTGACCGTTTTTGTGACTCAAAACACTGGAAAGACTTGCCCTGAGTTAGAACTGGAATTCGCACAGGTTGCCAGTCTCTTTCTGGCTCGGCTCACCGCCTGGATGAGGCTGACCTACATGTTCGGAACATGCTTAGGTCTTCAACTGAAAGCAGTTGGAGTGTTCCTCTCTGCAGCTAGCAaTCATCGTTATCTCATAGAGTTCCTGGAGGTTGGAGGGGTCCTAACCCTCCTGGAGATCTTAGGTCAGAAACAGACCAAGGAGGAGGACAAGGCAGAGGCCATTCGGCTGCTTCAGATAGTCTCCAACGCTGGACGCAAGTACAAAGAGCTAATCTGCGAAAGCTATGGTGTGAGAGCCATTGCAGAGTGTCTGGCCAAGTCCAAGACAGAGGGGACCCAAGAGACAGCACGGGCCCTGTTGGAGTCCCTGGCCCATGGAAACCCCAAATACCAGAACCAGGTGTACAGAGGTCTGATTGCCCTGCTGACCTGTATCTCGCCCAAGGCCCAGCAACTGGTCTTGCAGACCCTCCGCATAGTACAAGACATAGTGAAGGAAGCCCACCCCAGCATCGTGGGACCTCTGTTGAATTTGTTGAGGTCCCTGCATTTGGAGGTGCAATATGAGGctatcGAGCTGATCACAGATCTCAGGCAGTATGAGGTCAGACCGGCGCTGCTCACAGGTCTCGTAGATCTGCTCAAACCGGCTACGGAGGGAATGCAGACATACAAGATTCTTGAAGACCCAGAAATGACCAAGATGACTGAATCCCTGCCAGTGTATGTCCAACAAGCTGCGGCAGCCAAAGCTTTAAGGTTGCTTGCTCAGGGGAGTCAGGAGCTGTCCCAGGAACTGCTTCCTCTCAGAGTGGTGCACCACTTGATGTATGCTATGGGAAACCAGGAGCATGCTGACGCCCAGAGACAAGCCAGCCTGGCGCTGGAGCATTTTGTCCGTACATACCCAGTGGTGGAGGAGCATGTACGCAGAACCATGGGTATCAATCTGTTTGCAGCCTTCATGCACAAACCTGAGACTTTCTACATGACGATGGATGAAATTCAAGCAGATATCCTGCTATCAAATAAAGTCAACATTTCGGAAGTTTTGGAGCACCAGAGCTCAGAAGACTGAACCAGACAAAGTACAGGCATGCcattttgtataataatagttTACACTTTATTTTCATGTTACagtaaaataaatcaataaaaataa
>XM_021621329.2
AGAGAACTGGTCTGAGTAGCACGGGTAGGCCTGGACCACACTACTGTTGACTGGGATTTAGACTCAGCCAACAGTGAAATCCTGGACATGGAATCTATACTCCCCTTCACACATCAGGACAACCTTGTGGAGGACATCTTCTGACAGTACTAGCAAACCACAGTTGACCAATTCCCTTCCCAAAAAGGCGGACTTTTTCTAGTTCTATGGCGCACTGTACCAGGTGGGAGGAGGCAACGCTGCTAAGCAACACACAACTCGAGACAGCTGTGATTTCCAGCTTGTCGTTTTGGCAGTATACTAACAGCAGTCATCGTTATCTCATAGAGTTCCTGGAGGTTGGAGGGGTCCTAACCCTCCTGGAGATCTTAGGTCAGAAACAGACCAAGGAGGAGGACAAGGCAGAGGCCATTCGGCTGCTTCAGATAGTCTCCAACGCTGGACGCAAGTACAAAGAGCTAATCTGCGAAAGCTATGGTGTGAGAGCCATTGCAGAGTGTCTGGCCAAGTCCAAGACAGAGGGGACCCAAGAGACAGCACGGGCCCTGTTGGAGTCCCTGGCCCATGGAAACCCCAAATACCAGAACCAGGTGTACAGAGGTCTGATTGCCCTGCTGACCTGTATCTCGCCCAAGGCCCAGCAACTGGTCTTGCAGACCCTCCGCATAGTACAAGACATAGTGAAGGAAGCCCACCCCAGCATCGTGGGACCTCTGTTGAATTTGTTGAGGTCCCTGCATTTGGAGGTGCAATATGAGGctatcGAGCTGATCACAGATCTCAGGCAGTATGAGGTCAGACCGGCGCTGCTCACAGGTCTCGTAGATCTGCTCAAACCGGCTACGGAGGGAATGCAGACATACAAGATTCTTGAAGACCCAGAAATGACCAAGATGACTGAATCCCTGCCAGTGTATGTCCAACAAGCTGCGGCAGCCAAAGCTTTAAGGTTGCTTGCTCAGGGGAGTCAGGAGCTGTCCCAGGAACTGCTTCCTCTCAGAGTGGTGCACCACTTGATGTATGCTATGGGAAACCAGGAGCATGCTGACGCCCAGAGACAAGCCAGCCTGGCGCTGGAGCATTTTGTCCGTACATACCCAGTGGTGGAGGAGCATGTACGCAGAACCATGGGTATCAATCTGTTTGCAGCCTTCATGCACAAACCTGAGACTTTCTACATGACGATGGATGAAATTCAAGCAGATATCCTGCTATCAAATAAAGTCAACATTTCGGAAGTTTTGGAGCACCAGAGCTCAGAAGACTGAACCAGACAAAGTACAGGCATGCcattttgtataataatagttTACACTTTATTTTCATGTTACagtaaaataaatcaataaaaataa
>TU13258
aggtcgctaggtgtacggtgcttcctggttggatgcgcgctgtgttaagaagttgtttcggaggacgcatggctctcgaactTCGCCTGGGAGGTGTACTCAGACTGAACCACCACGTGGTAAGAGAACTGGTCTGAGTAGCACGGGTAGGCCTGGACCACACTACTGTTGACTGGGATTTAGACTCAGCCAACAGTGAAATCCTGGACATGGAATCTATACTCCCCTTCACACATCAGGACAACCTTGTGGAGGACATCTTCTGACAGTACTAGCAAACCACAGTTGACCAATTCCCTTCCCAAAAAGGCGGACTTTTTCTAGTTCTATGGCGCACTGTACCAGGTGGGAGGAGGCAACGCTGCTAAGCAACACACAACTCGAGACAGCTGTGATTTCCAGCTTGTCGTTTTGGCAGTATACTAACAGCAGGTAATCGATTATTTTCAACAAAGCAATTCACGTTTCAATGTAGGCGTACTTATGTGCGACTCACTCGATAACATGCCTTGCTAGTTATGCATTTGGTTCAAACGTCT

Function

NR:

description
galectin-3-binding protein B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621168.2 False 1644 mRNA 0.49 13 12461367 12473058
XM_021621329.2 False 1355 mRNA 0.50 11 12461367 12473058
TU13258 True 539 lncRNA 0.40 3 12460957 12466332

Neighbor

gene id symbol gene type direction distance location
LOC110525067 LOC106574005 coding upstream 148728 12257968 ~ 12312639 (+)
LOC110535487 NA coding upstream 207836 12250169 ~ 12253531 (+)
mindy4 fam188b coding upstream 296195 12154422 ~ 12165172 (+)
LOC110535183 LOC106574001 coding upstream 314031 12115086 ~ 12147336 (+)
LOC110535080 LOC106574000 coding upstream 388680 12056808 ~ 12072687 (+)
LOC110536107 LOC106574012 coding downstream 11628 12484686 ~ 12496762 (+)
LOC110536612 LOC106574016 coding downstream 203675 12676733 ~ 12695295 (+)
LOC110536795 tnni3k coding downstream 229615 12702673 ~ 12765497 (+)
LOC110536960 LOC106613985 coding downstream 317149 12790207 ~ 12802143 (+)
LOC110537039 LOC106574022 coding downstream 422356 12895414 ~ 12934612 (+)
G11140 NA non-coding upstream 23573 12437565 ~ 12437794 (+)
G11137 NA non-coding upstream 26854 12433464 ~ 12434513 (+)
G11130 NA non-coding upstream 45335 12415311 ~ 12416032 (+)
G11127 NA non-coding upstream 50531 12410597 ~ 12410836 (+)
G11103 NA non-coding upstream 101914 12359227 ~ 12359453 (+)
G11422 NA non-coding downstream 396340 12869398 ~ 12870186 (+)
G11475 NA non-coding downstream 465755 12938813 ~ 12939019 (+)
G11494 NA non-coding downstream 489502 12962560 ~ 13002364 (+)
G11500 NA non-coding downstream 500634 12973692 ~ 12998589 (+)
G11539 NA non-coding downstream 570777 13043835 ~ 13044050 (+)
LOC110523899 LOC106574090 other upstream 946985 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 2300081 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2469825 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3001414 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 4205489 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 765555 13238613 ~ 13295452 (+)
G12410 NA other downstream 1155805 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 1719398 14192456 ~ 14214939 (+)
G13380 NA other downstream 2206292 14679350 ~ 14679578 (+)
G13381 NA other downstream 2206640 14679698 ~ 14680027 (+)

Expression


Co-expression Network