LOC110536960 (LOC106613985)


Basic Information

Item Value
gene id LOC110536960
gene name LOC106613985
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12790207 ~ 12802143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622671.2
CACAACTATATTGGCACAAATGCGTAATGTGCGCCAAAGTTTTCGTTGCGCACATGTAGGCTATAAAGGCTAAAGAATTCGGCACACATGCATCCTAACCGCGGTATATTGTTCTATTCAGGGAACACCAGTTGAAGTATTGGATGAAGATGTATGCTCTCTCGGCTCATCCTCCCCATCGCTGCGAGAGATTGTATATCCGCCTCGGTCGGGTAGAACTGTTTGTGCAAGTTGCAGTGAGGAAATTGTGGATAAATACTTGCTGAAGGTTAACGATTTGTGCTGGCATGTGCGTTGTCTCTCCTGTAGCATGTGTCAAATATCGCTTTGCAGTCATACAAGTTGTTACATCAAAGACAAAGAGGTCTTCTGCAAATTGGACTACTTTAGAAGGTATGGAACATGGTGCGCGTGCTGCGGCCGAAATATATACTCTACCGACTGGGTCCGCCGGGCGAAGGGCAACGTATACCACCTGGCGTGTTTCGCCTGTTTCTCCTGTAAGAGGCAGTTGTCCACGGGGGAAGAGTTTGCCCTGGTGGAGGAGAAGGTGCTGTGTCGTGTACATTACGACTGTATGCTGGACAACCTGAAATGTGCCCTGGAGAAAGAAAGTGGTATGAACCTAGAGGGGACGATGCCAACAGAACAGCAAGTGAATCAGCCCAGGCCGTCGAAGAGAGCGCGCACCAGCTTCACCGCTGACCAATTACAGATAATGCAGGCACAGTTTTCCCAGGACAACAACCCGAATGCCCAGACCCTGCAGACGCTGGCAGAGCAGACAGGCCTGAGTAGGAGAGTCATACAGGTTTGGTTCCAGAACTGCAGAGCACGCCATAAGAAGCATGTGAGCCCCAACCACTCCTCAGCCACGCCGTTGTCCTCCCTGCAGCCCGGCTGCCACtcccagcccaccccagccccAGAAGAGCGGCAGTACACAGCCTACAGCACCCCAGAGGGATCCATGCTCACTGCTCTGCACTCCTACATAGATGtgCACTCTCCTCAGTCTAAGCTATTCCAGCCCCTGCTGTCCCTCCACACCATGACCTCCCAGCCTGTGACACACgcctga

Function

NR:

description
LIM/homeobox protein Lhx8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622671.2 True 1081 mRNA 0.52 7 12790207 12802143

Neighbor

gene id symbol gene type direction distance location
LOC110536795 tnni3k coding upstream 24710 12702673 ~ 12765497 (+)
LOC110536612 LOC106574016 coding upstream 94912 12676733 ~ 12695295 (+)
LOC110536107 LOC106574012 coding upstream 293445 12484686 ~ 12496762 (+)
armh1 cssa16h1orf228 coding upstream 317149 12460957 ~ 12473058 (+)
LOC110525067 LOC106574005 coding upstream 477568 12257968 ~ 12312639 (+)
LOC110537039 LOC106574022 coding downstream 93271 12895414 ~ 12934612 (+)
ptgfr ptgfr coding downstream 209396 13011539 ~ 13016203 (+)
btf3l4 LOC105028135 coding downstream 232218 13034361 ~ 13047924 (+)
zfyve9b LOC106574024 coding downstream 246298 13048441 ~ 13062930 (+)
LOC110537958 LOC106574029 coding downstream 291531 13093674 ~ 13104588 (+)
G11140 NA non-coding upstream 352413 12437565 ~ 12437794 (+)
G11137 NA non-coding upstream 355694 12433464 ~ 12434513 (+)
G11130 NA non-coding upstream 374175 12415311 ~ 12416032 (+)
G11127 NA non-coding upstream 379371 12410597 ~ 12410836 (+)
G11422 NA non-coding downstream 67255 12869398 ~ 12870186 (+)
G11475 NA non-coding downstream 136670 12938813 ~ 12939019 (+)
G11494 NA non-coding downstream 160417 12962560 ~ 13002364 (+)
G11500 NA non-coding downstream 171549 12973692 ~ 12998589 (+)
G11539 NA non-coding downstream 241692 13043835 ~ 13044050 (+)
LOC110523899 LOC106574090 other upstream 1275825 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 2628921 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2798665 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3330254 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 4534329 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 436470 13238613 ~ 13295452 (+)
G12410 NA other downstream 826720 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 1390313 14192456 ~ 14214939 (+)
G13380 NA other downstream 1877207 14679350 ~ 14679578 (+)
G13381 NA other downstream 1877555 14679698 ~ 14680027 (+)

Expression


Co-expression Network