ptgfr (ptgfr)


Basic Information

Item Value
gene id ptgfr
gene name ptgfr
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13011539 ~ 13016203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623210.2
TATACGTATTCACTTTGGTCATGACTCAGATGCTCCGTAAAATCGACGTTTTAAATGTAATTTGTGTTGGAGTGTTGTTTATTAACATGTCGTGAAGATAAATGTTTTGGGGCTCTGTCAAAGCCACTCAACCATCCTTTCTGTCACATGTTGATCCTCAGACTGGACCAGGACTTGATAATGCCAGGCAATGGGAGTTCCGAGGCGGGATGCAGCAGGACAGCAACAGGCAGCTACTCCAACACCACCTGTGGCCAGACGGAGCTGTCCGTCACCGCCTCCGTCATTTCCATGACCGTGGGCATCTTCTCCAACATCCTGGCTCTCTGCATCCTGGTCAACGCCTACCGTCGCTTCCGCCTCAAGACCAAGGCCTCCTTCCTGCTGTTCGCCAGCGGCCTGGTGGGCACCGATCTTCTGGGTCACCTCATTAACGGCTCCCTGGTGCTATATGTCTACGCTTGTAACAAGGAGTGGGAAGCCTTTGACCCACACCACATCCTGTGCAGTCTCTTCGGGGTGTCCATGGTGTTTTTCGGTCTGAGCCCCCTGCTCCTGGGTAGCCTAATGGCGGTGGAACGCTGCATTGGTGTCACCAGGCCCCTGTTCCACTCCACAGCCCTTGCCGCCCACCACATGAAGAGGCTGCTGGGGCTGACCTGGCTGTTAGCTGCCCTGGTGGCTCTGCTACCTGTTCTGCTGTGGAGGCCCTACCAGGTGCAGCGCTCCCAGAGCTGGTGTTTCTTCCGCATGGAGGGGCCCCGCAACTGGCTGGACGTGGTGCTCCCGCTGATCTTCTCTACACTGGGCCTCCTGGCTCTGCTGGTGTCCATTGTGTGCAACACACTGACCAGCTGCACCCTACTGCAGTCCAAGCTGCGCTGCCACCGCCAATGTCGCCGCAAGGACACCTCCCACCACTTTGAGATGATCTGCCAGCTCATGACCATCATGCTTGTGTCCTGTGTGTGCTGGGGCCCTTTATTGGTTAACGTCATCATACTGAGCACCCAGGTCCAGGGCGAGCGTGCGTTTGCCCGCCTGCTGCTGGCAGTCCGCATGGCCACCTGGAACCAGATCCTGGACCCATGGGTCTACATCCTCCTGAGGAAGGCCATCCTCAAGAGGCTCTTCCTGCTGGTGCACAGCTGCTGGTGCATCAAgtcccactcccaccccctcaaccGGTGGAAGTGCAGCCCAGTGAAAGGCTCTGGGGAGACCAGCGGCAGCTCCATCAGCACTAAACCAGAATTCTTCTGTTTGGATGGAAGTGTTGGAGGCCTACCAGACACAATAATTAAGCCCATCACCTGAACCCCTGGATGGGGCATCTGATCTGAGAGACCCTGGGTCCCAGGTGGAGTGTTTGCAGGCAGCACCTGTAGCACATTGATGTATAGTTGGAGTAGGCGATAAGCTAAGGAACCAGATAAGGTTTGTTTTAGGAAGAGCATATGAAGGATCATTCAaagtattataaactgggtagtttgagccctgaatgctgattggatgacagccgtggtatatcagaccatataccacgggtatgacaaaacttttatttttattgctcTAATTACGCTGGTAActagtttataacagcaataaggcacctcgagggtttgtggtatatggccaatataccacggctaagggctgtgcccaggcactccacattgcat

Function

symbol description
ptgfr Enables prostaglandin F receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway; inflammatory response; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human PTGFR (prostaglandin F receptor).

NR:

description
prostaglandin F2-alpha receptor

GO: NA

KEGG:

id description
K04262 PTGFR; prostaglandin F receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623210.2 True 1688 mRNA 0.54 2 13011539 13016203

Neighbor

gene id symbol gene type direction distance location
LOC110537039 LOC106574022 coding upstream 76927 12895414 ~ 12934612 (+)
LOC110536960 LOC106613985 coding upstream 209396 12790207 ~ 12802143 (+)
LOC110536795 tnni3k coding upstream 246042 12702673 ~ 12765497 (+)
LOC110536612 LOC106574016 coding upstream 316244 12676733 ~ 12695295 (+)
LOC110536107 LOC106574012 coding upstream 514777 12484686 ~ 12496762 (+)
btf3l4 LOC105028135 coding downstream 18158 13034361 ~ 13047924 (+)
zfyve9b LOC106574024 coding downstream 32238 13048441 ~ 13062930 (+)
LOC110537958 LOC106574029 coding downstream 77471 13093674 ~ 13104588 (+)
mknk1 LOC106574026 coding downstream 88301 13104504 ~ 13115472 (+)
LOC110538273 LOC106574027 coding downstream 101116 13117319 ~ 13118363 (+)
G11494 NA non-coding upstream 9175 12962560 ~ 13002364 (+)
G11500 NA non-coding upstream 12950 12973692 ~ 12998589 (+)
G11475 NA non-coding upstream 72520 12938813 ~ 12939019 (+)
G11422 NA non-coding upstream 141353 12869398 ~ 12870186 (+)
armh1 cssa16h1orf228 non-coding upstream 545207 12460957 ~ 12473058 (+)
G11539 NA non-coding downstream 27632 13043835 ~ 13044050 (+)
G11574 NA non-coding downstream 135801 13152004 ~ 13152991 (+)
G11586 NA non-coding downstream 165609 13181812 ~ 13182548 (+)
G11999 NA non-coding downstream 194261 13210464 ~ 13210813 (+)
G12000 NA non-coding downstream 194905 13211108 ~ 13211689 (+)
LOC110523899 LOC106574090 other upstream 1497157 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 2850253 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3019997 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3551586 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 4755661 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 222410 13238613 ~ 13295452 (+)
G12410 NA other downstream 612660 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 1176253 14192456 ~ 14214939 (+)
G13380 NA other downstream 1663147 14679350 ~ 14679578 (+)
G13381 NA other downstream 1663495 14679698 ~ 14680027 (+)

Expression


Co-expression Network