LOC110485979 (LOC106574047)


Basic Information

Item Value
gene id LOC110485979
gene name LOC106574047
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14172519 ~ 14185257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557288.2
gcagttgttgccatcctgtacctgtcccgcaggtgtgatgttcggatgtaccgatcctgtgcaggtgttgttacacgtggtctgccactgcgagggcaggcagctgtccatcctgtctccctgtcgtGCTGTTTTAGGCGTCCCCCGTcgttgcaatttatttccctggccacatctgcagttctcatgcctccttgcagcatgcctaaggcatgttcaagCAGATGAGCTGGGATGCcgagcatctttcttttggtgtttttcagagtcagtagataggcctctttagtgtcctacgttttcatgactgtgaccttaattgcccaccgtctgtaagttgttagtgtcttaacaactgtTCCACagctgcatgttcattaattgtttgtggttcattggactagcatgggaaacggtgtttaaaccctttacaatgatctgtgaagttatttggattttaactaattatctttgaaagagagtgtcctgaaaaagggacgctTTTTTTCCCTGAGTTTATATTGTAGAGTAACTGTGTAATACTGAAAGAATGGTTAgacaatttctgtgttcatttaTTTTACATAGTTGCAACTTGAGCGGTATGACTGGCCACATACAGTATCATTCACCTGTTGCACCCATTTATTTAGTGTCCTGATATATTGTTACAATAAATTCAAAAGGAACGTTCATAACATGCAAAATAGCTACCCTGGTTTGTACGGTTATGAACAATGCATAGATGCTTTTCCGGTTGCATGTGTACTTTGCTCAATCAATGTAAACATGACGCGGTGCTTTCGACCTCCCTCTGGTATCACTGGCTATAAATAAATGTATAACTACATTTTTATTGGTATTTCATGAATGAGTCATGTCTCACCCGTGTAAATTCCTCTAATGCCGTCAGGGGATCTGATAGGCTACTGTTCCTACAGAGGTGTGTCTGTCTGGAAATTTGGTACATTCATTCACAGCGGAGTTCATGTTTTTAAGACCTTTTTCTTTTCAGCACCTTTGTAAATTGCAGGATGTCTGTCGACAATGTTTATGGCCGCGTAGAGCAGTATAGGAACGCATGATAAAAATTCATTATTTCGCTACTGACATTTTTTCACCCAACACTCGCAATTCGACTCCCATCACCTTATAGGTTATCAAATCTCTTTACAGATTAAGTCAGAAGCCGATTCATATCGATAATCAAGAGGTCGCTTCGCCAACGAATTGACTTCGTCAGGTGCATAGCCTACAGCTCAGTTCAGTAGGCGAGCCAACGAAAAAAAGAACTGCGAGAAAACAGAACCACCCACAGAAGATTTATAGAGATGGCGAAGGCAGACCAGCGCTTTGGGCAGAGAGATGGCTCCGACCAGAACTTTGACTACATGTTCAAGCTCCTCATCATTGGAAACAGCAGCGTGGGAAAAACTAGCTTTCTGTTCCGCTACGCAGACGACTCGTTCAGCAACTCTTTCGTCAGCACAGTGGGCATCGACTTCAAAGTCAAGACTGTCTACAGGAATGACAAGCGGGTTAAGCTCCAGATATGGGATACAGCAGGGCAGGAGAGGTATAGGACTATCACCACCGCTTACTACAGAGGAGCTATGGGCTTCATCCTCATGTACGATATCTGCAATGAAGAGTCCTTCAACGCTGTGCAGGACTGggctaCCCAGATAAAAACCTATTCGTGGGATAACGCTCAGGTCATCCTGGTGGGCAACAAGTGTGATGTGGGCGAGGAGAGGGTGGTGCCCACAGAGAAGGGGAAGCACTTGGCTGACCAATTAGGGTTCGAGTACTACGAGGCCAGCGCCAAGGAGAACATTAATGTCCGCCAGGTGTTTGAGCGGCTGGTCGACATCATCTGCGTCAAGATGTCCGAGCGAGTGGACGTGGAGCCGCCCATGGTCCCCGGCGTCAAGACTACCAGACTCACCGACAAGCCCCCCCAGTTACCTCAGAAGTGCACCTGTGCCTGACTCACACTTATAGGGCTGAGCCAAGCCATGCCGAGCCAAGCCATGCCGAGCCATACTTGGCTGGCCTGGTTACGCTTCtaccatagttgctggaaccaTACTGGAAAATACCATTTGAATAGAAACTATCCTAGCCAGCACCGTGCAGTTGGGGTTGGCCCTATAGTATGAGTGAGGTACTACTGATTTGGCCCCTCAGTTCTCCACTACGATACTTGccattcaaatcaaaatcaaatcaaatgtatttatatagccctttgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatacaggtgtagaa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06108 RAB3B; Ras-related protein Rab-3B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557288.2 True 2331 mRNA 0.46 5 14172519 14185257

Neighbor

gene id symbol gene type direction distance location
LOC110485648 LOC106574045 coding upstream 919 14162385 ~ 14171600 (+)
LOC110508285 LOC106574085 coding upstream 27573 14140496 ~ 14144946 (+)
tm2d1 LOC106574044 coding upstream 418844 13734763 ~ 13753675 (+)
pdzk1ip1 LOC106574040 coding upstream 730991 13436016 ~ 13441528 (+)
LOC110485322 LOC106574039 coding upstream 741402 13425566 ~ 13431117 (+)
LOC110486057 NA coding downstream 7210 14192456 ~ 14214939 (+)
axdnd1 axdnd1 coding downstream 34910 14220167 ~ 14244412 (+)
tdrd5 LOC106574052 coding downstream 66132 14251389 ~ 14304106 (+)
LOC110486340 fam163a coding downstream 133279 14318536 ~ 14349627 (+)
LOC110486505 LOC106574055 coding downstream 165288 14350545 ~ 14495848 (+)
G12680 NA non-coding upstream 73228 14099008 ~ 14099291 (+)
G12675 NA non-coding upstream 81168 14090734 ~ 14091351 (+)
G12670 NA non-coding upstream 88543 14083471 ~ 14083976 (+)
G12663 NA non-coding upstream 103833 14068471 ~ 14068686 (+)
G12662 NA non-coding upstream 106653 14065600 ~ 14065866 (+)
G13121 NA non-coding downstream 236148 14421405 ~ 14421630 (+)
G13334 NA non-coding downstream 383842 14569099 ~ 14571242 (+)
G13359 NA non-coding downstream 448706 14633963 ~ 14635553 (+)
G13363 NA non-coding downstream 457106 14642363 ~ 14642610 (+)
G13364 NA non-coding downstream 457473 14642730 ~ 14642996 (+)
G12410 NA other upstream 540629 13617059 ~ 13666871 (+)
LOC110538561 LOC106574035 other upstream 912523 13238613 ~ 13295452 (+)
LOC110523899 LOC106574090 other upstream 2658137 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 4011233 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 4180977 9980527 ~ 9991542 (+)
G13380 NA other downstream 494093 14679350 ~ 14679578 (+)
G13381 NA other downstream 494441 14679698 ~ 14680027 (+)
G13391 NA other downstream 514919 14700176 ~ 14700730 (+)
G13434 NA other downstream 626514 14811771 ~ 14812624 (+)

Expression


Co-expression Network