LOC110489630 (LOC106573979)


Basic Information

Item Value
gene id LOC110489630
gene name LOC106573979
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15508762 ~ 15521789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562404.2
TGTGGCTTGACAAACTGACATTGAAGGCAAAATTGGTTGATGATAAGTGTCGCTTTAGCCAAATTTAGTTATTTTGTCACGTTTTTAATGTTAATCAGTTGTTGAAATTACTAGTATTCTCGAACGATGTCATATGACATTACCATCTTCCTGATCTGGGGTTGGGCCCTGGGGAGAATGTCTGAGACTTTACAGTCAGAGGGCTTTGGCCATGAGGATGCTGGCATTGCCTCTCAGCCTAAATATCCTGCAAGTCTTCCAGTTCTGGAGTTTCCAAAGCCTTTGGTAGGTCTGGTGAGAAGGAAAAGGGATTGGGTCATTCCTCCCATCAACTTCCCAGAGAACTCAAGAGGCCCTTTCCCCGAGCATATGGTGCAGTTTAGATCCAACAATGATAAAGAGGTGAAGATCCTGTACAGCATCACTGGTTCTGGAGTAGATCAACCCCCTGTGGGACTGTTCACTGTGGACAAAAACTCTGGGTTTCTCTATGTGACCCAGCctttggacagagagagaaaaaaccaTTATGTGCTTTTGGCTCGTGCTGTTGCAGTTGGTGCGGGTATAGCAGAAGATCCAATGGAGATTATTGTTAAAGTAATTGATATGAATGACAACAAGCCAGTTTTCACCCAAGATCCTTTTACAGGGATTGTCCCGGAAGCATCCCTACCAGGGTTTGAGGTCATGGAGGTCACAGCCACCGATGCAGATGAGCCTGGCTCAGCCAATTCTGATGTCAGATACACTATTATAAATCAGGAACCTGAGCTGCCGAGTCGCAACATGTTTTTCATCAACCCTGTCACAGGAGGGATCCGGGTCAATGCTGCTGGACTGGACAGAGAGAATATTCCAAAATATACATTGGAAATCCAAGCTGCTGATATGGAGGGCAATGGTCTGTCATGTTTCGGAAAATCCATAATTACTGTAACGGACAGCAATGACATAGCTCCTCAATTTGAGAAGTCTTCGAACACGGTGTCTGTCCCAGAGAACAAAGTGAATGCCCTGGTGGTCAAAATGCCAGTGAGTGATGGAGATGAGCCACACTCTTCCAACTGGGCCACCAAGTACAGGATTGTAGATGGAGACCCAGGTAGAATGTTCACTGTAAACACTGGACCTAGTAGACTGGAAGGAATCATTACCACAGCCAAGCCCCTTGACTTTGAGAAGGACAATCGCTACACCCTGTTGGTGACTGTGGAGAATGAGGTCCCATTTGCCACCCCCCtgcccacctccacctccacagtcCAGGTGAATGTGGAGGATAGGAATGATGCCCCTGTCTTTGACCCAGTGGAAAAGGTTGTTTCTATATCTGAACACCTGCCAGTGGACAGTGATTTGGTTCTGTATACAGCCATTGATCCAGACATCATGGCACATAAACTCATgtATCGCATGGACAGAGATCCTGCTAAATGGCTGGACATCAACAGTGAGACCGGAATGATCAAAACCAAACACTCCCTGGACAGAGAGTCTCCCTTTGCCAAAGATGGCAAATACAGAGTTCTCATTCTCGCCATCGAAGATGAAATCCCTGCAACTGGAACTGGAACCATTCTGATAGAGCTGGAAGATGTAAACGACAATGCTCCGACTATTGATGACACCCCGTTGAAGCTCTGCAACCAAGACCCCCGTCTAGTGCGTTTGGctgtgacagacagagacgggCCAGGCTTTGCTGAACCCTTCAGTGTAGAACTTCTGGAAGGGTCCAATATGTATTGCGCTGCCCAAATGGACGAAACAGGAACTGTGGTTGAATTGACATTCAAGGCCATGAGGGAGCAGAGAAACTTCTACATTAATCTGAGGGTCACTGATGCTGGCGGGCTGAAACAAGACCATGTCATTCACGTCACCATGAATGAGGACAGCTGCATGACCTGGGGGGATTTCTGTGTTAGATCCTGACCTATATGACATTTCCTTAGCATTTTTATAGCTTGCAGAGCTGGATTGCTTGTTTTGGGAAGGTTGTCACTTTTTTTGACAGCAGGGGTATGTCACAAAGCCAGAAATTAGTAGGAAAATTCACAGCTAATTTGCCAGTATTTGTTCCATCAAAGTACTGAACATTTTTCGGAATTACTTATGTCAACGCATGTTTTTTTGTTcacattttctatttttttttgctAGTTGTGTGTGCATTTTTACATTTCAAGGCAAATATGGGTTTGTATACATTTCCTCGGGAACTGCTGATATATTTTACCATTGTTGAGAAGGTTGCTTGTTTTTTATTTCCATGGAGAACATGATCTTTGCATGCTTGCAGAGAGCTTTATGCATGTTTCTAATATAAATTGAATAAAGCCTTTTTGGTTCATTCTCA
>XM_036950655.1
TGTGGCTTGACAAACTGACATTGAAGGCAAAATTGGTTGATGATAAGTGTCGCTTTAGCCAAATTTAGTTATTTTGTCACGTTTTTAATGTTAATCAGTTGTTGAAATTACTAGTATTCTCGAACGATGTCATATGACATTACCATCTTCCTGATCTGGGGTTGGGCCCTGGGGAGAATGTCTGAGACTTTACAGTCAGGTAATGGCTTTGACTATCCACTGACTGGAGGGGAAGAAACTGCGGAGGGCTTTGGCCATGAGGATGCTGGCATTGCCTCTCAGCCTAAATATCCTGCAAGTCTTCCAGTTCTGGAGTTTCCAAAGCCTTTGGTAGGTCTGGTGAGAAGGAAAAGGGATTGGGTCATTCCTCCCATCAACTTCCCAGAGAACTCAAGAGGCCCTTTCCCCGAGCATATGGTGCAGTTTAGATCCAACAATGATAAAGAGGTGAAGATCCTGTACAGCATCACTGGTTCTGGAGTAGATCAACCCCCTGTGGGACTGTTCACTGTGGACAAAAACTCTGGGTTTCTCTATGTGACCCAGCctttggacagagagagaaaaaaccaTTATGTGCTTTTGGCTCGTGCTGTTGCAGTTGGTGCGGGTATAGCAGAAGATCCAATGGAGATTATTGTTAAAGTAATTGATATGAATGACAACAAGCCAGTTTTCACCCAAGATCCTTTTACAGGGATTGTCCCGGAAGCATCCCTACCAGGGTTTGAGGTCATGGAGGTCACAGCCACCGATGCAGATGAGCCTGGCTCAGCCAATTCTGATGTCAGATACACTATTATAAATCAGGAACCTGAGCTGCCGAGTCGCAACATGTTTTTCATCAACCCTGTCACAGGAGGGATCCGGGTCAATGCTGCTGGACTGGACAGAGAGAATATTCCAAAATATACATTGGAAATCCAAGCTGCTGATATGGAGGGCAATGGTCTGTCATGTTTCGGAAAATCCATAATTACTGTAACGGACAGCAATGACATAGCTCCTCAATTTGAGAAGTCTTCGAACACGGTGTCTGTCCCAGAGAACAAAGTGAATGCCCTGGTGGTCAAAATGCCAGTGAGTGATGGAGATGAGCCACACTCTTCCAACTGGGCCACCAAGTACAGGATTGTAGATGGAGACCCAGGTAGAATGTTCACTGTAAACACTGGACCTAGTAGACTGGAAGGAATCATTACCACAGCCAAGCCCCTTGACTTTGAGAAGGACAATCGCTACACCCTGTTGGTGACTGTGGAGAATGAGGTCCCATTTGCCACCCCCCtgcccacctccacctccacagtcCAGGTGAATGTGGAGGATAGGAATGATGCCCCTGTCTTTGACCCAGTGGAAAAGGTTGTTTCTATATCTGAACACCTGCCAGTGGACAGTGATTTGGTTCTGTATACAGCCATTGATCCAGACATCATGGCACATAAACTCATgtATCGCATGGACAGAGATCCTGCTAAATGGCTGGACATCAACAGTGAGACCGGAATGATCAAAACCAAACACTCCCTGGACAGAGAGTCTCCCTTTGCCAAAGATGGCAAATACAGAGTTCTCATTCTCGCCATCGAAGATGAAATCCCTGCAACTGGAACTGGAACCATTCTGATAGAGCTGGAAGATGTAAACGACAATGCTCCGACTATTGATGACACCCCGTTGAAGCTCTGCAACCAAGACCCCCGTCTAGTGCGTTTGGctgtgacagacagagacgggCCAGGCTTTGCTGAACCCTTCAGTGTAGAACTTCTGGAAGGGTCCAATATGTATTGCGCTGCCCAAATGGACGAAACAGGAACTGTGGTTGAATTGACATTCAAGGCCATGAGGGAGCAGAGAAACTTCTACATTAATCTGAGGGTCACTGATGCTGGCGGGCTGAAACAAGACCATGTCATTCACGTCACCATGAATGAGGACAGCTGCATGACCTGGGGGGATTTCTGTGTTAGATCCTGACCTATATGACATTTCCTTAGCATTTTTATAGCTTGCAGAGCTGGATTGCTTGTTTTGGGAAGGTTGTCACTTTTTTTGACAGCAGGGGTATGTCACAAAGCCAGAAATTAGTAGGAAAATTCACAGCTAATTTGCCAGTATTTGTTCCATCAAAGTACTGAACATTTTTCGGAATTACTTATGTCAACGCATGTTTTTTTGTTcacattttctatttttttttgctAGTTGTGTGTGCATTTTTACATTTCAAGGCAAATATGGGTTTGTATACATTTCCTCGGGAACTGCTGATATATTTTACCATTGTTGAGAAGGTTGCTTGTTTTTTATTTCCATGGAGAACATGATCTTTGCATGCTTGCAGAGAGCTTTATGCATGTTTCTAATATAAATTGAATAAAGCCTTTTTGGTTCATTCTCA

Function

NR:

description
B-cadherin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562404.2 False 2362 mRNA 0.45 13 15508762 15521789
XM_036950655.1 True 2407 mRNA 0.45 13 15508762 15521789

Neighbor

gene id symbol gene type direction distance location
sass6 sass6 coding upstream 40751 15447458 ~ 15468011 (+)
lrrc39 lrrc39 coding upstream 71737 15433089 ~ 15437025 (+)
LOC110489303 dbt coding upstream 75998 15425122 ~ 15432764 (+)
LOC118966767 NA coding upstream 77121 15431509 ~ 15431641 (+)
LOC110529632 dph5 coding upstream 267596 15192649 ~ 15241166 (+)
LOC118944451 NA coding downstream 30326 15552115 ~ 15555470 (+)
LOC110489937 mepd coding downstream 73524 15595313 ~ 15606479 (+)
LOC118966758 NA coding downstream 77301 15599090 ~ 15599215 (+)
LOC110490377 LOC106573932 coding downstream 100729 15622518 ~ 15636224 (+)
LOC110490510 LOC106573976 coding downstream 173021 15694810 ~ 15716774 (+)
G13956 NA non-coding upstream 86957 15421591 ~ 15421805 (+)
G13908 NA non-coding upstream 95517 15340394 ~ 15413245 (+)
G13907 NA non-coding upstream 166142 15342280 ~ 15342620 (+)
G13890 NA non-coding upstream 184794 15317312 ~ 15323968 (+)
G14359 NA non-coding downstream 6541 15528330 ~ 15528643 (+)
G14365 NA non-coding downstream 9212 15531001 ~ 15531361 (+)
G14415 NA non-coding downstream 89284 15611073 ~ 15611634 (+)
G14417 NA non-coding downstream 93516 15615305 ~ 15615517 (+)
G14418 NA non-coding downstream 93782 15615571 ~ 15615837 (+)
G13639 NA other upstream 546759 14961554 ~ 14962003 (+)
G13434 NA other upstream 696138 14811771 ~ 14812624 (+)
G13391 NA other upstream 808032 14700176 ~ 14700730 (+)
G13381 NA other upstream 828735 14679698 ~ 14680027 (+)
LOC118941201 NA other downstream 1057297 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1394710 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1441268 16962997 ~ 16967790 (+)
LOC110495874 LOC106573877 other downstream 2132418 17654164 ~ 17673094 (+)

Expression


Co-expression Network