LOC118944451


Basic Information

Item Value
gene id LOC118944451
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15552115 ~ 15555470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039836.1
TAGGGGGGTGTTACATTATCTGTTGAATGTTACATTATCACTCAAAGTAAAGATTGAGTGACAGACAGTTCGACAACAATGGTTTGCTGTCATGATCCTCCTCATCAATCTGttttCACCTATCCCGCCTTCAGAGGAGGGAGACCAGTGTAATGATCTGCATGAGGTATTGGGGTCAGTATTTATCAGGAAGTGGAAACAGGCTTTTGAGTTCAGGAAGTTCTAGCCACCCCTGATGCAGAATGACAGACACCTCTTTCTGTGTTCCAATCCTGATCTTGAGGGAAAAACACCAGACAGTCCTATCCACTGAACTAAACAGCCACCAGACTATGATCAGCTGAAATTAGTAGGTAACAGAAAAGGTTATATGCCTACGTGATAGGTACATCTCACAGACAGCATTAGGCAACACTCAGCCTTATTAGACAACTAAACAAGATTTACAAACTAGCCAAAAGCATGCCATTAACAACAATTGTATCTTCCACACCCACATTTACCCAAATGGCTAGTTTATTTAAAGACCCTCTTCCGTAATCCTTGTCGTTTGTCCAAGACTTCATCGTGATTTAATCTCTGGCTAACACCGGCGGCACCTGCACCCGCATGCCGGCCGAGGGCTTCAGCCTCGTGTCTTCCTCATgtcctaactaactaactggaTTAATTACTGGAACTCACTGGGCACACCACATCATTTAAACGTGGAATTTGGGTAAtttttggttgagacgttgatcaatgagatttcaacctttattcgCCCACTTCAAAAAATAAGCCAGAAGTTTCCCTATGTATTATCACTATGCTTTGAACCATCtgaaaagcacaaccaaattccaatctTTGTtacgctttcaaccatttaaaagcaaaaCAAAGTTCAAaatggaatacaatgtcagaCATTTGTATTTATATAATAACTTCATGTGTTGTctctgtgcttcatctaatagcagaaccaaatgatctggattgcagttgagattacattaaaagtacatggtgcaagtgatcaatgcagTTCGAGATTCTGTACAGATTAGTATAGCAATTGTGAAGACCTCCACTGACCTGTGACCTTTCATGCCatcttgaacatgcacactttctatgattacataacAAGACAAAAATAGTTACAGTAActtcaaaatgtggccatggatgtgttactcattttataATAAATGCTGTTACAGTAGTTTGTAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039836.1 True 1223 mRNA 0.40 3 15552115 15555470

Neighbor

gene id symbol gene type direction distance location
LOC110489630 LOC106573979 coding upstream 30326 15508762 ~ 15521789 (+)
sass6 sass6 coding upstream 84104 15447458 ~ 15468011 (+)
lrrc39 lrrc39 coding upstream 115090 15433089 ~ 15437025 (+)
LOC110489303 dbt coding upstream 119351 15425122 ~ 15432764 (+)
LOC118966767 NA coding upstream 120474 15431509 ~ 15431641 (+)
LOC110489937 mepd coding downstream 39843 15595313 ~ 15606479 (+)
LOC118966758 NA coding downstream 43620 15599090 ~ 15599215 (+)
LOC110490377 LOC106573932 coding downstream 67048 15622518 ~ 15636224 (+)
LOC110490510 LOC106573976 coding downstream 139340 15694810 ~ 15716774 (+)
LOC110490675 LOC106573928 coding downstream 355663 15911133 ~ 15919924 (+)
G14365 NA non-coding upstream 20754 15531001 ~ 15531361 (+)
G14359 NA non-coding upstream 23472 15528330 ~ 15528643 (+)
G13956 NA non-coding upstream 130310 15421591 ~ 15421805 (+)
G13908 NA non-coding upstream 138870 15340394 ~ 15413245 (+)
G14415 NA non-coding downstream 55603 15611073 ~ 15611634 (+)
G14417 NA non-coding downstream 59835 15615305 ~ 15615517 (+)
G14418 NA non-coding downstream 60101 15615571 ~ 15615837 (+)
G14427 NA non-coding downstream 82110 15637580 ~ 15638046 (+)
G14858 NA non-coding downstream 487912 16043382 ~ 16044075 (+)
G13639 NA other upstream 590112 14961554 ~ 14962003 (+)
G13434 NA other upstream 739491 14811771 ~ 14812624 (+)
G13391 NA other upstream 851385 14700176 ~ 14700730 (+)
G13381 NA other upstream 872088 14679698 ~ 14680027 (+)
LOC118941201 NA other downstream 1023616 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1361029 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1407587 16962997 ~ 16967790 (+)
LOC110495874 LOC106573877 other downstream 2098737 17654164 ~ 17673094 (+)

Expression


Co-expression Network