LOC110524584 (LOC106573153)


Basic Information

Item Value
gene id LOC110524584
gene name LOC106573153
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51455131 ~ 51458797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604390.2
GGGCACATATAAGTATCATCAGGAGAGGGACATGGCTATGTCTTGCAACACGACTGACAATTCACAACTCGATCTAAAAGCATCTCGGAATAGAGTAATTCAGCGGAGCCATTTGAAGTAGCCTACAGAAAATACTTCATGCAGACTCAAAAATAAGTTCACTGGAGGCTCAGTCAGTCCCACAGTCTCCACAACTTTTCCGTCAACCTGTGAGCACCACGGACAGGGGAAAGAGGGGTTTGGGCAAAATTGTAAAACAAATTCAAACACGTGAGACCGCACTGACCACACAAGGATGTCTGTCCACGCGTCCTGGCTACCAGTACCGCTGCTGGTGTGGGGACTGGTCTGCAGCTCAGTGCGCACTGCCCCGTTAGCGGGTGTGCAGAACGGCGCTCTTGAGCGGCATTGGGAAACGCTCTACTCGCGATCACTGGCTCGGAACCCATGGGAGAAGAGAGAAATCACCCGGGATGGTGAATATCTTATGGGCATCAAAAGACTTAGGCGTCTCTATTGCAACGTCGGCATTGGGTTTCATATTCAAGTTTTACCAGACGGAAAGATAACTGGAATACATAACGAAAATAGATACAGTCTCCTTGAGATATCACCTGTGGAGAGAGGGATTGTGACCATCTTTGGAGTACGAAGTGGTCTGTTTCTAGCCATGAACAGCAAAGGGAAGCTCTATGGCTCTGGTCATTACAATGACGAGTGCAAGTTCAAGGAAAGCCTCTTGGCAAATAACTACAACGCGTATGAATCTGCAGCCCACCCAGGGATGTATATTGGACTGAGTAAGACTGGCAAAACCAAAAAAGGAAACCGGGTAACACCAGCAATGACAGTGACACACTTCTTACCGAGGATCTGAATGATTCCAGACAGACTGTGCCTTCaacagagggcagaggagagagagagaggaaacaatgCACTTTCAAATGGTTTTTCTAGAGTGAGATATTTAAATAGTTTATTTATGATTCTTGAGACTTTTTATATTTTGGGAAAGTGGAATTACGTAGAAAGGGAACATGAAAAAAATgacaatagttttttttttttttttttttttttttttttttttaaatctattgaATGTGCGCTGCTATAAGTGTCTTGAGAGGAGTACATTTTCTTTTTAAACGTCAAATGGATTTTGCACTGTTTTTAAGTTATTGTTGTGCGGCAATGGTTGTGCAGTACGTGTCCTTGTCTTACTTGTGTTACTTTGAAAGAAGTTGCTGGCCCAAGTTTGTCAGAGTTGTCTCTCGGCATCAAAAAGATAGACAATGACGGAAAAGGTCCAAACCATTCAAAGTTAATTACAGGTCCCATGATTAGTCATTTATTGGCCGATACAATGACAATTGGGACTTACAAAAACTCCACAACACAGAAATGGGTTTCTGCATTGAATTTGTCGTGTGGTCTTGGTCAGAGTTGCGTGTGTTATGGCAGTATTTCTACGTCAGAAAGACCACTTGTTATTTTTCCATTCCTAATTGATTTAGTTTTTTACTACCTCAGTGTGGACGTGCAAGCTCCAGggattgtgttgttgtttgttctgtgtcttctacagtatgttgttctGTCATATTTCTGAGCGTGACATATGACGCTGCCACACTTCTGTGTTTTACAAGTTACAACTTAACCTACACTGTATACCACCGATAAGGTGAACTGGAGGAATTGAGAGGAACCCATTCAGAGAGAGGGAATCTGAGGTTAGAAGGCACATCTATAGTGTACGGTCAGGGTTAAAAGTAACTCTGGTCTAGGGTTGaactatatttttgttgttgtatgcaTGTATGGTATAAAACTCTTTCATAAATAGTACATGCAGCACACAAATGACTGGACGGTACTTGATTATCAGTAATTTATGACAATTCCACTTTCTTATGTTTTCTGTATTTCAAATATATGTATTGTTGTACTCAATGCCTGATATGTGGTTTTGTAAATCCTTGTGAATTGACTTCCCTTGCAGTTGTCAATAGTAAGAACCCATATTAGCTTTGGGAGTATGTtgctatttcagttttttttattcatgCAAACTAAACCAAGAAGAATGTCCTTTCTTGCTGGCACAGAGGATGCAGAAAATGAACAAAAACTGAAACTAGATGTGTTTCTTACTGTGTTCATTCATATGATCCCTTGTGACCTCCTGCAATCAGTTCAACATTATATTATGTTCTCTGTTATGCGTTTCATGTGTATAAAAACTATGTCTGTAGTTTTATACAGGTCCTGTTCAACTTTGTGATGTATGTGCTGTGCACATTATCAAAAAACGTAAAGAAAGTCAATAAATGATGTTCTGCAG

Function

NR:

description
fibroblast growth factor 4B-like

GO: NA

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604390.2 True 2350 mRNA 0.41 3 51455131 51458797

Neighbor

gene id symbol gene type direction distance location
LOC110524575 fgf3 coding upstream 3671 51449353 ~ 51451460 (+)
LOC110524569 LOC106573096 coding upstream 30828 51358288 ~ 51424303 (+)
shank2b LOC106573098 coding upstream 113498 51214830 ~ 51342260 (+)
acte1 LOC106561611 coding upstream 284787 51164077 ~ 51170344 (+)
LOC118964319 NA coding upstream 299735 51154507 ~ 51155396 (+)
trnap-ugg-2 NA coding downstream 171371 51630168 ~ 51630239 (+)
trnap-agg NA coding downstream 172035 51630832 ~ 51630903 (+)
LOC110524604 LOC106573091 coding downstream 343200 51801997 ~ 51852291 (+)
LOC110524623 LOC106573089 coding downstream 429603 51888400 ~ 51894917 (+)
LOC110524629 LOC106573088 coding downstream 441526 51900323 ~ 51917984 (+)
G56415 NA non-coding upstream 11960 51442964 ~ 51443171 (+)
G56185 NA non-coding upstream 165619 51289109 ~ 51289512 (+)
G56162 NA non-coding upstream 199487 51255351 ~ 51255644 (+)
G56156 NA non-coding upstream 208880 51245958 ~ 51246251 (+)
G56455 NA non-coding downstream 14899 51473696 ~ 51473921 (+)
G56475 NA non-coding downstream 41408 51500205 ~ 51500443 (+)
G56487 NA non-coding downstream 59938 51518735 ~ 51555869 (+)
G56507 NA non-coding downstream 90572 51549369 ~ 51565773 (+)
G56554 NA non-coding downstream 148817 51607614 ~ 51607991 (+)
LOC118964841 NA other upstream 1371135 50037523 ~ 50184257 (+)
G53181 NA other upstream 2561219 48893497 ~ 48893912 (+)
G52324 NA other upstream 3071874 48380542 ~ 48383257 (+)
G52080 NA other upstream 3430173 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 2207418 53632830 ~ 53705421 (+)
G59031 NA other downstream 2529343 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 2586052 54044813 ~ 54089850 (+)
G59963 NA other downstream 3262391 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 4446711 55905508 ~ 55923376 (+)

Expression


Co-expression Network