LOC110525380 (LOC106573028)


Basic Information

Item Value
gene id LOC110525380
gene name LOC106573028
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54420422 ~ 54444532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605445.2
CAGGCAACAATGTTCCAATAATAAACGCGATACATTTCTATATTCAGCGGTCTGAATTTTGTGCACCACTGCTCCTCTTGGCTGACTATATGTATGTCATATTACAACAAGGCCGACCAGAGCAGAGGATAACCACTGAAGCTTGCGGATTATTTGTCTACTTTTCACATTCTGGAGAATTTAGATTAAATCTGTGTGTCGATATCACTAGTTTGTGACCGAGTTGAGTTAATTCAGCGGTTTATATTTCGCTCTACGGTTGAGACGCCGTCGTGTTGTTTTCATCAAGATCAAGAACACTGACTGCATCATCATGTTGAAATCGTTTTAACTGACGTGAATGTAGATTACAGCTGTCTGGCATCTATTCCATCCACGCTCTGGCTGCCTCTGCGTTCTATCAATAGGGATGCATCTATTGATACTTAGTTCCATTTGATAGgtgTGTGTGATGGTAGTGTTCGGTGTGTGAGGCCTGTGAGAGGAGACCcactgcctcctccccttcagGATGTCTGAACCCCAGACACCAACATGGCCACAGGGCACAGAGTGTGTGGCCAAATACAACTTTAAGGGCACCACAGAGCAGGACCTGCCCTTCAACAAAGGAGATGTCTTAACCATAATCGTGGTGACTAAGGACCCGAACTGGTACAAAGCCAAGAACACAGCAGGTCAAGAAGGCACCATCCCAGCTAACTATGTCcagaagagagaaggggtgaaGCAAGGGGGCAAGCTGAGTCTAATGccATGGTTCCATGGTAAGATAACTAGGGAGCAGGCTGAGTGTCTCCTGATCCCCCCAGAGATGGGTCTGTACCTTGTGAGGGAGAGCACCAACTACCCTGGGGACTATACTCTGTGTGTGAGTTGCGACGGCAAGGTGGAGCACTACCGCATTGTCTACAAGGAGGGAAAGCTCAGCATCGACGAGGAGGCGTTCTTCGAGAACCTCATGCAGCTTGttgagcaCTATACCAAAGATGCAGATGGTCTCTGCACCAAACTGATCAAGCCGAAGCTGGAGGAGGGTACTGTGGCAGCCCAGGATGAGTTCTCCAGGAGCGGCTGGGCTCTCAACAGGAAGGAAATCAATATCCACCAGTCCATTGGGAAAGGAGAGTTTGGAGATGTAAAGGTGGGAGACTACAGAGGGACCAAAGTAGCGGTGAAGTGTATCAAACACGATGCTACAGCACAGGCCTTCATCGCTGAAGCTTCAGTCATGACGCAACTGAGACACAATAACCTGGTCCAGTTGCTAGGTGTCATCGTTGAGGAGAAGGGAAGCCTGTTTATCGTCACTGAGTACATGGCCAAGGGCAGTCTAGTGGACTACCTACGCTCCAGAGGTCGGACAGTGCTGGGTGGGGATTCCCTACTCAAGTTCTCAGTtGACGTGTGTGAGGCCATGGAGTATCTGGAGGCCAATAACTTTGTCCACAGAGACCTGGCAGCCCGTAATGTTCTGGTGTCAGATGATAACATCGCCAAGGTCAGCGACTTCGGCCTGACCAAGGAGGCCTCCTCTAATCAGGACACAGCCAAACTGCCCATCAAGTGGACCTCACCAGAGGCCCTAAGGGAAAAGAAATTCTCCACCAAGTCAGACGTGTGGAGCTATGGGATCTTGCTGTGGGAGATCTACTCCTTTGGACGAGTGCCTTACCCCAGAATTCCTCTAAAGGACGTGGTACCACGCGTGGAGAAGGGCTACAAGATGGATGCCCCAGACGGTTGTCCTGAGGTGGTGTATGAAGTCATGAAGCAGTGCTGGACCCTGGATCCCCTGGTGCGGCCATGCTTTAGAGTCCTCAGGGAGAAACTGCAGCATATCCTAGCCAAGGAGCTCTACCTGTGATGGAATAGGAAGAGGTGGTGAAAGGGGAAGTGGACAAGGATGGCTCTCCTTTCATTGAGGGAGAAATAGGACGGTCAAGGATTGCTCTTCTTTCATGATGGGACCGAAAGCCTGACATTATCAAGACCTCAGAGatcctccttcctctcttatAAAAAAGTTTTTGATTGACATTAGATTGTGTTAAAGTTTACTTGTTTTATAATTTCTCATTCTGTTGAAATGTTGTTGCCACGTGTTGGCATTTccactttttttttacattttcacatGGTCCTTTCCAGCACAGTTACAGGAAAGATGACGGATACGTAGCCTGGCCGGTGCAGTTCGGCTTGGCTCGGCTAGTGTGAATCAACCCCAAGTCAGGCAATACACTTCCCGTGTCCCTGCTCTCTACCCATACAGTGTAAGATTGTTACCCCAGTTAAATACGATCTGTGCCAAATGCCTCCAGAACGAACACAGGGCTATCCCCACAGATACTTCACTCCTCCTCTACACGCTtgcctttttattttttatttttttttgtttcttttatgTTTTATGCATTTGTTTGTTACACATCCTCCTCTCTTATTGCCACAAGTGTTCATCTCACATTTAACAAACTGGAAAGCAGAATAAATCCTCCACTAAAAAGTTGCTGAATTCAACATTTCAGGACGACGTGTAACATGACGGAGAGATTGAGATTGCATGGATACAGAGGGAAAAGAAGaagccattctggagagagaaaCTAAGGGCAAGTGTAACAGATAAACTAAGGGCAAGTGTATAGAAATAATTTAAATGTAACATGTACATGTGAAAACAGTTCAGAAATGAAAGCTGAAGGGAACCATGCATGTGGAACGAGAAGCCTTTTTTGTACCTTTTAAAGTTGTTTTTACTTTGCTGCCGTTATGATTAAATCATTCTACTTGAAAAAGTTTTGAAAAAGTT

Function

NR:

description
tyrosine-protein kinase CSK-like

GO: NA

KEGG:

id description
K05728 CSK; c-src tyrosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605445.2 True 2818 mRNA 0.47 12 54420422 54444532

Neighbor

gene id symbol gene type direction distance location
LOC110525344 pta1 coding upstream 123136 54282939 ~ 54297286 (+)
LOC118964411 NA coding upstream 171210 54242821 ~ 54249212 (+)
LOC110525327 LOC106573036 coding upstream 330572 54044813 ~ 54089850 (+)
LOC110525297 LOC106573037 coding upstream 453919 53955795 ~ 53966503 (+)
LOC110525287 LOC106573038 coding upstream 481946 53913928 ~ 53938476 (+)
adal adal coding downstream 923 54445455 ~ 54464446 (+)
LOC110532453 reln coding downstream 782007 55226539 ~ 55523230 (+)
LOC110532459 NA coding downstream 1117888 55562420 ~ 55671844 (+)
LOC110525494 LOC106573015 coding downstream 1229554 55674086 ~ 55738417 (+)
LOC110525514 LOC106573043 coding downstream 1370839 55815371 ~ 55830186 (+)
G59378 LOC106573031 non-coding upstream 98813 54319329 ~ 54321609 (+)
G59300 NA non-coding upstream 235250 54184580 ~ 54185172 (+)
G59299 NA non-coding upstream 237043 54182981 ~ 54183379 (+)
G59297 NA non-coding upstream 238546 54181673 ~ 54181876 (+)
G59296 NA non-coding upstream 238796 54180605 ~ 54181626 (+)
G59459 NA non-coding downstream 12848 54457380 ~ 54458833 (+)
G59489 NA non-coding downstream 60168 54504700 ~ 54505437 (+)
G59468 LOC100195798 non-coding downstream 73852 54518384 ~ 54533275 (+)
G59525 NA non-coding downstream 126412 54570944 ~ 54571156 (+)
G59542 NA non-coding downstream 148699 54593231 ~ 54594234 (+)
G59031 NA other upstream 431825 53988140 ~ 53988597 (+)
LOC118936380 LOC106581842 other upstream 749149 53632830 ~ 53705421 (+)
LOC110524575 fgf3 other upstream 2969487 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 4336426 50037523 ~ 50184257 (+)
G59963 NA other downstream 276656 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 1460976 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 1574944 56019476 ~ 56030371 (+)
G61804 NA other downstream 1802052 56246584 ~ 56247770 (+)
G61806 NA other downstream 1805356 56249888 ~ 56252015 (+)

Expression


Co-expression Network