LOC110525514 (LOC106573043)


Basic Information

Item Value
gene id LOC110525514
gene name LOC106573043
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55815371 ~ 55830186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605689.2
GCACCCCTAAGCTATTTAAATACCGTGAACCTCCCCATGTGCTCCATTGCTGCAGAAAAGCTGCATCCAGCCAGGGGAGAAGAGGCCAGCCGAAGACATTCCAACTCGCTTCTCAGTGTTGTTTCCACATCACTTTCACTAAACCTTCAAGatGACTACCAAGGAGAAGCTGATCACCCATGTGTTGGCTGGTGAGCCTGTTGGCTCCAGGAGCAAGGTGACAGTTGTTGGCGTCGGCATGGTTGGCATGGCCTCCGCAGTCAGCGTCCTACTCAAGGACCTGTGCGATGAGCTGTGCCTGATTGACGTGATGGAAGATAAACTAAAGGGTGAGGTCATGGACCTGCAGCATGGCAGCCTCTTCTGCAAGACTCACAAGATCGTGGGCGACAAGGACTACAGTACGACTGCCCACTCCAAGGTGGTGGTGGTCACAGCCGGTGCTCGTCAGCAAGAGGGTGAGAGCCGTCTGAACCTGGTGCAGCGCAACGTCAACATCTTCAAATTCATAATTCCCCAGATCGTCAAGTACAGCCCCAACGCCATCCTGCTGGTTGTCTCCAATCCTGTTGACATCCTAACCTACGTGGCTTGGAAGCTGAGTGGTTTCCCCCGTCACCGCGTCATCGGTTCCGGCACCAACCTGGACTCTGGTCGTTTCCGCCACCTGATGGGCGAGAAGCTACACCTTCACCCATCCAGCTGTCACGGCTGGATCATTGGAGAGCATGGAGACTCCAGCGtGCCCGTATGGAGCGGTGTGAATGTTGCCGGTGTTTCCCTGAAGGGCCTGAACCCAGACATGGGCACAGACGCAGACAAGGAGGACTGGAAGCACGTCCACAAGATGGTGGTCAATGGTGCCTATGAGGTCATCAAGCTGAAGGGTTACACCTCCTGGGCTATCGGCCTGTCCGTCGCTGACCTGGTTGAGAGCATCCTGAAGAATCTCCATAAAGTCCACCCTGTATCCACCCTGGTCAAGGGGATGCACGGTGTGAAGGAGGAGGTGTTTCTCAGCGTTCCCTGCGTGCTGGGAAACAGCGGTCTGACCGACATCATCCACATGACTCTGAAGCCCGAGGAGGAGAAGCAGCTGATCAACAGCGCTGAGACCCTATGGGGCGTACAGAAAGAGCTCACCTTGTAAAGAGTCCTGTGTGCCCTTCTGTAACATCCCCAACCCCCAATCCCACCTTCTGTATACCCGTCCTTGTTCTCCCCTATAGTCTTACTATTGATGGTACAAATGAAGCCTTTTAGGCAGGATCAATTATGTACAGTAGCTTAGTTGAAAAGCCAATCGAATCTCGTTTTGGCCTCCGATAAAAATGATTTGTTTGCACGGGAGAAGTATCTGGTATGATGTCGAATTTGGAGGAGTCATTTTGCTGTTTCTAGATATTAATGTATTGGCTTGTACTATGTCATCGATGTTTCTTGTCTTACTCACACTCTTTTCCTGTTAATGTTTTAGAAAGTGATTGAAATTGTGAGCAGGTTGATTTCCACCATTGCACTCTTTGTTTAGTATGTGCGAGAGTTGGCCAGAGCCATTCAGTTGCAAAACTAACCGTAAGTGAACGGATGCGAGTCTCTCTCAATGAAAGGTGTGTTTGTTTGGTATCGGTAGAAGGTCTGAAGAAAGGCAGTGGGTTTGAACACACTGCCAATTGCACTGTACCTGCTGTTTTGTATGTCAATAACAAAAAGCGTTATAAACATTGGAATTGTCTGGGcgctcaaataaaaaaaaatctggtgGCACTTTCGAATGTTATGTTTTGGGTTAAAACCTGACCTGTAAGTAACTGATGGTTACAATCAATGTTCTGTGCACCCTAAATGTCTGCTCATTTTTGTCACCGTTAATGATGATTTCTTAAAATCAGTCTCTCCATGTGGCTTTGGACTGAAGCCTCAGTGGCCCAAACTCCGCTGTTATGGTACTGCGATAAAGGCCTATATAGTTATTATGAGCTGAACTGGAACTACTGCTCTGTACTGTGCTTGTCAAGGCAGCTGGTCCGATCCGATTTTCTTCACCACCAACTAAATAAAACTACCAGGATGAAACAA

Function

NR:

description
L-lactate dehydrogenase A chain-like

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005737 cytoplasm cellular_component
GO:0004459 L-lactate dehydrogenase activity molecular_function

KEGG:

id description
K00016 LDH, ldh; L-lactate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605689.2 True 2079 mRNA 0.49 8 55815371 55830186

Neighbor

gene id symbol gene type direction distance location
LOC110525494 LOC106573015 coding upstream 76954 55674086 ~ 55738417 (+)
LOC110532459 NA coding upstream 143527 55562420 ~ 55671844 (+)
LOC110532453 reln coding upstream 292147 55226539 ~ 55523230 (+)
adal adal coding upstream 1350925 54445455 ~ 54464446 (+)
LOC110525380 LOC106573028 coding upstream 1370839 54420422 ~ 54444532 (+)
LOC118964919 NA coding downstream 145973 55976159 ~ 56024913 (+)
LOC110525521 LOC106576899 coding downstream 721562 56551748 ~ 56596653 (+)
eif3s6ip LOC106576896 coding downstream 1064066 56894252 ~ 56904226 (+)
vsir cssa18h10orf54 coding downstream 1205422 57035608 ~ 57062851 (+)
LOC110525562 LOC106576893 coding downstream 1792081 57622267 ~ 57765398 (+)
G61175 NA non-coding upstream 5389 55809751 ~ 55809982 (+)
G61168 LOC106573040 non-coding upstream 13933 55800550 ~ 55801438 (+)
G61164 NA non-coding upstream 17882 55797273 ~ 55797489 (+)
G61147 LOC106573040 non-coding upstream 48220 55761244 ~ 55767151 (+)
G61137 LOC106573040 non-coding upstream 65065 55746088 ~ 55750306 (+)
G61186 NA non-coding downstream 8976 55839162 ~ 55839841 (+)
G61194 NA non-coding downstream 66090 55896276 ~ 55896883 (+)
G61196 NA non-coding downstream 67874 55898060 ~ 55899076 (+)
G61198 NA non-coding downstream 70810 55900996 ~ 55901342 (+)
G61218 LOC106560732 non-coding downstream 102046 55932232 ~ 55934327 (+)
G59963 NA other upstream 1093908 54721188 ~ 54721463 (+)
LOC110525327 LOC106573036 other upstream 1753117 54044813 ~ 54089850 (+)
G59031 NA other upstream 1826774 53988140 ~ 53988597 (+)
LOC118936380 LOC106581842 other upstream 2144098 53632830 ~ 53705421 (+)
LOC110524575 fgf3 other upstream 4364436 51449353 ~ 51451460 (+)
G61202 LOC106573044 other downstream 75322 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 189290 56019476 ~ 56030371 (+)
G61804 NA other downstream 416398 56246584 ~ 56247770 (+)
G61806 NA other downstream 419702 56249888 ~ 56252015 (+)
G63958 NA other downstream 2336379 58166565 ~ 58168178 (+)

Expression


Co-expression Network