eif3s6ip (LOC106576896)


Basic Information

Item Value
gene id eif3s6ip
gene name LOC106576896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56894252 ~ 56904226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605747.2
ACACCAACAGTGAATATTTTGGTTCACCAGAATTACATTCGTGTCAAAtgaaacgctgcgtttgccttgcagcattgtgtTGCAGAAGCAGTTGCAGTGCATTCGGTGTGGTGCATACGAAGGATTTATCGAACgtatgcgtcaaactgtatgCGTTGATGGCTTGACAGAAATAGCAGCAGAAGGTGCATTTTTGTTAAATACATATCCAGATGACGCTGCATACTATATGCGACAAACTGTTGGTGTGTTCGAAGCGTGACTGTTTACTATTTGCTCGAGCTACAAATCGATTTCCGGTTCCTTTCCAGCGCGGTTTTGTTAAGCACACATTTCTAAATAGCAGCTGTTTTGTATGAGATTGAACATATCATAACATCATGTCCTACCCAACCGATGAAACCGAAGAAtATGACCCTTATTCCTACACAAATGACGATTATCTCCATACTGGTGACCCTAAAGCCGACCTGGCCTACGAGCGCCAGTATGAGCAGCAGACCTACCATGTCATCCCCGAGGTGATCAAAAACTTCCTTCAGTACTTCCACAAGACTATCTCGGACCTCATTGACCAGAAGGTGTACGAGCTGCAGGCCAACCGTGTGTCGAGCGAGAGCATCGAGCAGAAGATTTATGAAATCCAAGATGTCTACGAGAACAGctgGAACAAACTGACTGACCGCTTCTTCAAGACATCTCCTTGGCCAGAGGCTGAGGCCATCGCTTCCCTTGTCGGAAacgATGCTGTGTTCCTGATCCTGTATAAGGAGTTATACTACAGACACATCTACGCCAAAGTCAGCGGAGGACCCACTCTCGACCAAAGATTTGAGTCTTACTACAATTACTGCAACCTCTTCAACTACATTCTAAATGCAGATGGACCTGCCCCCCTGGAGCTGCCCAACCAGTGGCTCTGGGACATTATTGATGAGTTCATTTATCAGTTCCAGTCATTCAGCCAGTATCGCTGCAAGACAGCCAAGAAGTCTGAGGAGGAGATTGAGTTCCTTAGGAACAACCCCAAGATCTGGAACGTTCATAGTGTTCTGAACGTACTCCACTCGCTGGTGGACAAAAGCAACATCAACCGCCAGCTGGAGGTCTATACCAGTGGAGGCGATCCAGAGAGTGTGGCTGGGGAGTATGGCCGTCACTCCCTGTATAAGATGCTGGGATACTTCAGCCTGGTGGGGCTGCTGAGGCTGCACTCTCTGTTGGGGGACTACTACCAGGCCATCAAAGTCCTGGAGAATATCGAGCTCAACAAGAAGAGTATGTACTCTCGTGTGCCCGAGTGCCAGATCACCACCTACTACTACGTGGGCTTTGCCTACCTGATGATGAGGAGGTACCAGGACGCCATCCGTGTGTTCGCAAACATTCTCCTCTACATCCAGAGGACCAGGAACATGTTCCAGAGGTCCACCTACAAATATGAGATGATCAACAAGCAGAACGAGCAGATGCACGGGCTGCTGGCCATCGCCCTGACCATGTACCCCATGCGCATCGACGAGAGCATCCACACCCAGCTCAGGGAGAAGTACGGAGACAAGATGCTTCGCATGCAGAagggAGACCTTCAGGTGTTTGAGGAGCTCTTCAGCTTCGCCTGTCCCAAGTTCCTGTCCCCGGTGGTGCCCAACTACGACAACGTGCATCCTAACTACCACAAGGAGCCCTTCCAGCAGCAGCTCAAGGTGTTCGCCGAGGAGGTGCAGCAACAGGCCCAGCTCTCCACCATCCGCAGtTTCCTGAAGCTCTACACCACCATGCCCGTGGCCAAGCTGGCAGGCTTCCTGGACATGACAGAGCAGGAATTCCGCATCCAGCTGCTGGTCTTCAAACACAAGATGAAGAACCTGGTATGGACCAGTGGCATCTCTGCCTTGGACGGAGAGTTTCAATCCGCCTCAGAGGTCGACTTCTACATTGACAAgGACATGATCCACATCGCAGACACCAAGGTGGCCCGCCGCTATGGAGACTTCTTCATCAGACAGATCCACAAGTTTGAGGAGTTGAACAGAACGCTGAAGAAGATGGCTATGAGTGGAGCCAGCACCACTGCCACCACAACCACCCGGGCCACATGAGTCGGAACTATGAATTCCAGTGTGTGGCCTACCTGGATCCACCAAGAATGCTTTTTCTATGTAATTTGAAAACAAAAGATGAAGTGGTGTCCTGCTGGTGTTTTGTTCAGGTGCACATGTAGTCATTGTGGTCATTTTTATTAATGAACAGGTTGTACTGTGATTTTAGTACCTTTTACGAATAGTACAGTAGTTGATGATAAATCAGAACCACTAGATGGCAACATTTAGCTTCCAATGTCCAACATATATATTACTCTTTATCGTAAAAGTTACAGAACTTGAGTTTATGTTATTAGGTGAACTACTGAGATTAGATAATGTATAACAAATGTCAACTATAAAATGTCATCCAATATCATGAGCTGTGTATTGAAATTGTCAGCCTTCATGTATTTCCAGATACTAAATTATTCTGTCGTTCGCGCTACATACTTTGGTCTGAGAGTGCCATCATTGAAGTTGTGTGTGGTGACGAGGGGCCTTGTACAAAACAAACCAATCAGGATCAAAGCAAATGACAAATTTTCAAACTGCCGCTTTACCCACGTGTTCTGGCTCTGGTCCAACCTATTGGTTTCTGGACGAATCGGATGCCCCTGAATGTGTTCGCATTCGGTGAAGGGTCAGGGAGGTATTCAGATCCACACATGTGGAGAAGAAACTAATGTCTGTGGGTGTAGTGTTTGGCcggagcaaggagtctgggtatCCAGGCAACTGTCAACATGATCAGCATAGTGTGTAGTTTTACAGTATAACTAGTTACCAGCTCCTCCTCAGTGCTCCAATAGTGAGCGGAATTGGCTACACACTCCTATCAACCCACTGACCCGGGGACGGAGGCAgttgcatatttttttttttttatcacagaTCATCCACAACAACATTTCTCAACACGTAACTCAGGGCTGGGTGACAATGACAAATGAAAATGTTCAAAATGGGAGTATAAAAATATATCATGCATAACACTCAGGTCGGGAAACGGTTGCTATTCAAAAGGAAACCCAACAAATGTCTCAAGTACAATGTAGTACACATATTTCAAACATCCATTTTGTCTACCCATTTTGGTAAGAGCATTTTTttcttccaaaatattttttctatgggtcattttttattatatattttttagctTTTACAATAGAGCAAATCCTGCTCATTTTGACCATGAACTCACTCTGGTGGCAATATCAAAAAAAATTTGTGGGGCAGCATACCCtctttttcatatatatatactcccaCCCTTACCCCTTCTGGCAATCCAAGGGCTAGATTCAGTCCATAGGGCTGAAGATCCGGGGTATAGCGCGATTGAAATTTAAAAACCGAGTTCtcagactgcattcacggtaaacactgcatataTCGGCTCAATCTTGCTATACCGCAGATCTTCAGTGCTATGGATAGAATTTTGCCTGAAAATAAGGCTTCCAGTTCCATACTGAGGCATTGTTCCACTCTTACTCAGTcccaattattatttttattgccCATGTAACTTGAAGCGAGGAACTGTATTGATGCACTCGCTGTGGCTCTGTCTATCAGTGTACTCTTTGAGTAACAGTGAGTGTTCTCTTTTATTATTGGTTCGTCCAGTCCTAGAGCTGCTCTGCTGGGCCACTAGCCTGGCACGCAAAACAGATGTTACAGTGGTGAGCTCAgcgttcagtctggtttaaccaggctactTGGCCACCATAGCAGAGTGGGTTTATTTATTAATGTGTCTTGTGCTAATATCCAGACAAAGCCTCCTCTTCGTCTGTGCTCCTCAATGATGACATCATTAAACAAGTCCTTCTGTAGTCAAATATCATGATGGAGACCTATGTCTGTTGGTGTCCAGTTAGGTCTCCAAATTCAGGATACCCAAGACAACCCATTCATTGGGAGACAGAACAGAAGGGCACTGCAGTCCCCATATCCAGACCTCAAGTCCTTTCAATTCAATGAATGTCCTTATGTatcccctcttcccttcctcacCCAATGAGTGCTAATCTCTTACCTCTTTTacagtaaataaaaaaaatacatttcta

Function

NR:

description
eukaryotic translation initiation factor 3 subunit L

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15029 EIF3L; translation initiation factor 3 subunit L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605747.2 True 4165 mRNA 0.46 15 56894252 56904226

Neighbor

gene id symbol gene type direction distance location
LOC110525521 LOC106576899 coding upstream 297599 56551748 ~ 56596653 (+)
LOC118964919 NA coding upstream 869339 55976159 ~ 56024913 (+)
LOC110525514 LOC106573043 coding upstream 1064066 55815371 ~ 55830186 (+)
LOC110525494 LOC106573015 coding upstream 1155835 55674086 ~ 55738417 (+)
LOC110532459 NA coding upstream 1222408 55562420 ~ 55671844 (+)
vsir cssa18h10orf54 coding downstream 131382 57035608 ~ 57062851 (+)
LOC110525562 LOC106576893 coding downstream 718041 57622267 ~ 57765398 (+)
LOC118964920 NA coding downstream 790272 57694498 ~ 57722025 (+)
wdr11 wdr11 coding downstream 901908 57806134 ~ 57940604 (+)
LOC110525578 NA coding downstream 1057490 57961716 ~ 57963823 (+)
G62406 NA non-coding upstream 5884 56888123 ~ 56888368 (+)
G62405 NA non-coding upstream 6798 56887194 ~ 56887454 (+)
G62230 NA non-coding upstream 19656 56874381 ~ 56874596 (+)
G62062 NA non-coding upstream 253717 56640266 ~ 56640535 (+)
G62061 NA non-coding upstream 254798 56639226 ~ 56639454 (+)
G62414 NA non-coding downstream 5942 56910168 ~ 56910375 (+)
G62415 NA non-coding downstream 7380 56911606 ~ 56911817 (+)
G62447 NA non-coding downstream 56173 56960399 ~ 57012732 (+)
G62501 NA non-coding downstream 112141 57016367 ~ 57016865 (+)
G62504 NA non-coding downstream 115216 57019442 ~ 57019752 (+)
G61806 NA other upstream 642237 56249888 ~ 56252015 (+)
G61804 NA other upstream 646482 56246584 ~ 56247770 (+)
G61284 LOC106573044 other upstream 863881 56019476 ~ 56030371 (+)
G61202 LOC106573044 other upstream 970876 55905508 ~ 55923376 (+)
G59963 NA other upstream 2172789 54721188 ~ 54721463 (+)
G63958 NA other downstream 1262339 58166565 ~ 58168178 (+)
G63959 fgfr2 other downstream 1317296 58221522 ~ 58223130 (+)
G64292 NA other downstream 1682632 58586858 ~ 58587585 (+)
G64315 NA other downstream 1761108 58665334 ~ 58665906 (+)
G64338 NA other downstream 1795070 58699296 ~ 58700379 (+)

Expression


Co-expression Network