LOC110526628 (LOC106576800)


Basic Information

Item Value
gene id LOC110526628
gene name LOC106576800
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62864201 ~ 62874655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607771.2
CTAGGTTTACAGAGCAGATTGGATCAGATCAAGGCAGagagagtaaagaggagagagggagaggagagagtgggaaactgagtgagagagcaaaagagagagagagagagagaagcagagaacaGACTGTTTAAAACAGCACTGTTTCGGGAAAGGAGGGACATCCAGCGCAGCAGCAGAGGCAGCATACTGATCCTCCAACCAGCTGCTGAGCAGACCTCCAGAGCGCCAGACCTCACCCTCAGCCTGACCTCTCTCCACCCCAGCAGATAGCTGCCCGCTGAcggaagagagagcaagagacacacCAGGGAAAAGGAGAGGATCCCACTCCACCCGTTCAAAACCGCCTCAAGCTGTGGCTaggggagcagacagacagacaccggtGCTGCAGGCAGTGGTGAGAGATGGTTAGGAGGAGGAGACTACAGCTCCAGAGTGGAATAGCTGGATCGAACCTGAGAGGAATTCCAAAAACAGCTGTCCGGCAGACATCCCTCCCGAGAGCAAGTGGCGAGAGCAGGGCGGCCCCAGGGCAGAGACAGTAGTCAGTCAGCCCCAGTGAGTTTGGGaaccacacgccacacacacctCTTTAGCAGTCAGCACTAGGACTGCAGACCTTCAGGAGGGCAGTGGACACCTTTTGGCAGGAACCAGGAGCTTATCCCAGGAATTACACAAGGTGAGGGAAAGGAAATGGGGCTGGTTGACCACACTGCAACCTCATAGACAACACTGGTGAGAACTTGGACTCCTGATCAACTTGGATTTCCTGATTAATGACAGAAATATCAAAGCTATCTTCGGAGCAGCACAAGACAACACAGCCATTTCATTGAGAATGTAATTTCCTCATCTCCCCAGGGAGACCTTGTGCTCAGTGTGAAGTTCTTCACCCATCCTAAAGTTCCGGGAGAGTCCTCCTCTTTGTCCTTTATCTCTGAGCTCTATTCAACAGTGACCACCATGCCTGCCAAAGCACCCATCTACCTGAAGTCCAAAAATAGCAAGAAAGGCAAGAAGTGTCGTCTGAGAGACATCCTGTCCCCAGACATGATCAGCCCACCGCTGGGGGACTTCCGCCACACCATCCACATCGGAAAAGGCGGGGAGAGGGACGCCTTCGGGGACATGTCCTTCCTCCAGGGAAGGTTTGAGCTCCTGCCTGGGAAAGGTGAGGTGTTCCGTCCGCAGTACAGCATCCACAACGAGTTCCTGCGGGCCAACAGCGCATCTGATGCCCAGTTTCCTGACACACCCTCTCCCGTTCTAAAGAACGCCATCTCACTCCCTTCAATTGGGGGTTGCCAGGCCCTCACCCTGCCCCACCTCTCCACCGCTGTGTTCTCTATGCCCGCTATGGACCCCCTGGTTTGCATGGTAGGGCGGATCCCTACCTCTCCCCTGGGGAGCCCAGACGGGGCTGACATCCTGGAGGTTGAAACCCCGTTGGGTTCCATCGAGGTCTTCAGCAGCAACCCGACCAGACATCCGACAGAAGTCACAACCAAACCAGGCGTCCTGCTGGATCTGATAGAGAAACCAGAGAAGCCAAAGACGGAGAAAGTCTCCAAAAGTCATCATAAAAAGCACAATGGTGAAAACGGGTATGAAAAGCCTTCACCTACCTATTACATCAATGGCAACAGCAATGGTAACGGTGTCTTCAATGAAAACAGCAATGGCATCTTCAATAGTAATGAAGGCTTCAGCGGCAATGACAACCgcaatggctttagaagctttaaCAATGACATTACCCTCCGCTTCGAGAAAAAGCTCTCTGATTGCAATGGAGACTGGGTGGACAGGGACAGCGGGGTGGATGAGGGGCGCCTATGCGACTTTGACTTTGAGTTCTCCAAGGACAAGAGCGTGTCACAGTATTCAATCTCCCACATCACCGGGTCTCTTCTGTCACTTGAACTCGATTTGGGCCCCTCCATTCTTGATGATGTACTCAACATCATGGGTGACCCCAAGGCAAAGAGCAGACCTTGAGCAATGCCAAAGCTGAAGAGGTGAAAGGGAAATACAGAACTTGAGAGAAGTATGAGAAAGGTCTCACAAACCTGTCAAGATACAGTCCATGGCATGTGGAGCGCTGCTTATGTCCTTATTTTCTAAATAAGTTTCTAATTTAGCTTCTTGGAAGTCTCAATGCTTTTATTGTTTGTGCGTTGTGCCACCAGTATTAGGAGATGCATGTGCTATTGAATTACTACTAAACCAAAGCCATTGTGCCTTTTATTTTGCAATTAAATTAAGATTAAAGGGTAGTTTAGTGTTCTTTTCCCGACTTTTGCTGTAGATAAAAAAGGTTGCTTTGATACACAATCTAAAGCCCTGTTTCTCTGTAAATATAATGCATCTTGTGTGACTTTTAACATGTTTATCAAGGCACTGTTTTGTTTGTCACATGACCATTTTATTAACAAAACTACAAAGAATCTTATGCATAATATACAGTACTTGTGTTTTTATTAAATGGCATTAATAAATTAAA
>XM_021607763.2
GCAGATTGGATCAGATCAAGGCAGagagagtaaagaggagagagggagaggagagagtgggaaactgagtgagagagcaaaagagagagagagagagagaagcagagaacaGACTGTTTAAAACAGCACTGTTTCGGGAAAGGAGGGACATCCAGCGCAGCAGCAGAGGCAGCATACTGATCCTCCAACCAGCTGCTGAGCAGACCTCCAGAGCGCCAGACCTCACCCTCAGCCTGACCTCTCTCCACCCCAGCAGATAGCTGCCCGCTGAcggaagagagagcaagagacacacCAGGGAAAAGGAGAGGATCCCACTCCACCCGTTCAAAACCGCCTCAAGCTGTGGCTaggggagcagacagacagacaccggtGCTGCAGGCAGTGGTGAGAGATGGTTAGGAGGAGGAGACTACAGCTCCAGAGTGGAATAGCTGGATCGAACCTGAGAGGAATTCCAAAAACAGCTGTCCGGCAGACATCCCTCCCGAGAGCAAGTGGCGAGAGCAGGGCGGCCCCAGGGCAGAGACAGTAGTCAGTCAGCCCCAGTGAGTTTGGGaaccacacgccacacacacctCTTTAGCAGTCAGCACTAGGACTGCAGACCTTCAGGAGGGCAGTGGACACCTTTTGGCAGGAACCAGGAGCTTATCCCAGGAATTACACAAGAAATGGGGCTGGTTGACCACACTGCAACCTCATAGACAACACTGGTGAGAACTTGGACTCCTGATCAACTTGGATTTCCTGATTAATGACAGAAATATCAAAGCTATCTTCGGAGCAGCACAAGACAACACAGCCATTTCATTGAGAATGTAATTTCCTCATCTCCCCAGGGAGACCTTGTGCTCAGTGTGAAGTTCTTCACCCATCCTAAAGTTCCGGGAGAGTCCTCCTCTTTGTCCTTTATCTCTGAGCTCTATTCAACAGTGACCACCATGCCTGCCAAAGCACCCATCTACCTGAAGTCCAAAAATAGCAAGAAAGGCAAGAAGTGTCGTCTGAGAGACATCCTGTCCCCAGACATGATCAGCCCACCGCTGGGGGACTTCCGCCACACCATCCACATCGGAAAAGGCGGGGAGAGGGACGCCTTCGGGGACATGTCCTTCCTCCAGGGAAGGTTTGAGCTCCTGCCTGGGAAAGGTGAGGTGTTCCGTCCGCAGTACAGCATCCACAACGAGTTCCTGCGGGCCAACAGCGCATCTGATGCCCAGTTTCCTGACACACCCTCTCCCGTTCTAAAGAACGCCATCTCACTCCCTTCAATTGGGGGTTGCCAGGCCCTCACCCTGCCCCACCTCTCCACCGCTGTGTTCTCTATGCCCGCTATGGACCCCCTGGTTTGCATGGTAGGGCGGATCCCTACCTCTCCCCTGGGGAGCCCAGACGGGGCTGACATCCTGGAGGTTGAAACCCCGTTGGGTTCCATCGAGGTCTTCAGCAGCAACCCGACCAGACATCCGACAGAAGTCACAACCAAACCAGGCGTCCTGCTGGATCTGATAGAGAAACCAGAGAAGCCAAAGACGGAGAAAGTCTCCAAAAGTCATCATAAAAAGCACAATGGTGAAAACGGGTATGAAAAGCCTTCACCTACCTATTACATCAATGGCAACAGCAATGGTAACGGTGTCTTCAATGAAAACAGCAATGGCATCTTCAATAGTAATGAAGGCTTCAGCGGCAATGACAACCgcaatggctttagaagctttaaCAATGACATTACCCTCCGCTTCGAGAAAAAGCTCTCTGATTGCAATGGAGACTGGGTGGACAGGGACAGCGGGGTGGATGAGGGGCGCCTATGCGACTTTGACTTTGAGTTCTCCAAGGACAAGAGCGTGTCACAGTATTCAATCTCCCACATCACCGGGTCTCTTCTGTCACTTGAACTCGATTTGGGCCCCTCCATTCTTGATGATGTACTCAACATCATGGGTGACCCCAAGGCAAAGAGCAGACCTTGAGCAATGCCAAAGCTGAAGAGGTGAAAGGGAAATACAGAACTTGAGAGAAGTATGAGAAAGGTCTCACAAACCTGTCAAGATACAGTCCATGGCATGTGGAGCGCTGCTTATGTCCTTATTTTCTAAATAAGTTTCTAATTTAGCTTCTTGGAAGTCTCAATGCTTTTATTGTTTGTGCGTTGTGCCACCAGTATTAGGAGATGCATGTGCTATTGAATTACTACTAAACCAAAGCCATTGTGCCTTTTATTTTGCAATTAAATTAAGATTAAAGGGTAGTTTAGTGTTCTTTTCCCGACTTTTGCTGTAGATAAAAAAGGTTGCTTTGATACACAATCTAAAGCCCTGTTTCTCTGTAAATATAATGCATCTTGTGTGACTTTTAACATGTTTATCAAGGCACTGTTTTGTTTGTCACATGACCATTTTATTAACAAAACTACAAAGAATCTTATGCATAATATACAGTACTTGTGTTTTTATTAAATGGCATTAATAAATTAAA
>XM_036982370.1
caatttgtatttggtatacactcaatttgtatacactcaatttgtatttttcCAATGACATGGTACAATTTTTTGGgctgatttcatgttgaattcacgttagttgaaaatcaaatgtaaatcaaaactagaggTTGAACTGATGACTGCCCAGTGGGATGACTGGTATTTCAGTCAAAATTACGATTGAAACAGAACGTCCAGCTATCAAAGTAAAAACAAATAAGCATCTGCCTCCCCCTCTTTTAAAATCCTCCAATAATCCCCTGTAGCCCTCCTCCAACCGTTAGTTCTCCTAactcttcccttccctctttctctgcatcACTTCAAcgcccccctctttccctcttggtGCGTGTCTGGGCAGTAGCCCTCTCCTCCATCGTCTGCCTTGCTCTGATCCTACTAAAGCCCTCTCACCTCTCTTCGCCCAATCTGCTGTCCAGCTGTTCCATATTAGCACATGTTGGAGGAGGCAGCCTTGGAGGGGGGTCTCGTAAGGACCTGAGCAGATGGGCCTGAGCCTGGGCTTCAGTTCACCAGGCCTTGCCCTCGAATCTCATATGGCCTTTACGCTTTCTAAATGCAGGGGGATGAGGGGAACTGGGGATGAAGACATTCCGTGTGTGTCCACTATTTATTTTGTCGTCTTGTAAATGGGGCTGGTTGACCACACTGCAACCTCATAGACAACACTGGTGAGAACTTGGACTCCTGATCAACTTGGATTTCCTGATTAATGACAGAAATATCAAAGCTATCTTCGGAGCAGCACAAGACAACACAGCCATTTCATTGAGAATGTAATTTCCTCATCTCCCCAGGGAGACCTTGTGCTCAGTGTGAAGTTCTTCACCCATCCTAAAGTTCCGGGAGAGTCCTCCTCTTTGTCCTTTATCTCTGAGCTCTATTCAACAGTGACCACCATGCCTGCCAAAGCACCCATCTACCTGAAGTCCAAAAATAGCAAGAAAGGCAAGAAGTGTCGTCTGAGAGACATCCTGTCCCCAGACATGATCAGCCCACCGCTGGGGGACTTCCGCCACACCATCCACATCGGAAAAGGCGGGGAGAGGGACGCCTTCGGGGACATGTCCTTCCTCCAGGGAAGGTTTGAGCTCCTGCCTGGGAAAGGTGAGGTGTTCCGTCCGCAGTACAGCATCCACAACGAGTTCCTGCGGGCCAACAGCGCATCTGATGCCCAGTTTCCTGACACACCCTCTCCCGTTCTAAAGAACGCCATCTCACTCCCTTCAATTGGGGGTTGCCAGGCCCTCACCCTGCCCCACCTCTCCACCGCTGTGTTCTCTATGCCCGCTATGGACCCCCTGGTTTGCATGGTAGGGCGGATCCCTACCTCTCCCCTGGGGAGCCCAGACGGGGCTGACATCCTGGAGGTTGAAACCCCGTTGGGTTCCATCGAGGTCTTCAGCAGCAACCCGACCAGACATCCGACAGAAGTCACAACCAAACCAGGCGTCCTGCTGGATCTGATAGAGAAACCAGAGAAGCCAAAGACGGAGAAAGTCTCCAAAAGTCATCATAAAAAGCACAATGGTGAAAACGGGTATGAAAAGCCTTCACCTACCTATTACATCAATGGCAACAGCAATGGTAACGGTGTCTTCAATGAAAACAGCAATGGCATCTTCAATAGTAATGAAGGCTTCAGCGGCAATGACAACCgcaatggctttagaagctttaaCAATGACATTACCCTCCGCTTCGAGAAAAAGCTCTCTGATTGCAATGGAGACTGGGTGGACAGGGACAGCGGGGTGGATGAGGGGCGCCTATGCGACTTTGACTTTGAGTTCTCCAAGGACAAGAGCGTGTCACAGTATTCAATCTCCCACATCACCGGGTCTCTTCTGTCACTTGAACTCGATTTGGGCCCCTCCATTCTTGATGATGTACTCAACATCATGGGTGACCCCAAGGCAAAGAGCAGACCTTGAGCAATGCCAAAGCTGAAGAGGTGAAAGGGAAATACAGAACTTGAGAGAAGTATGAGAAAGGTCTCACAAACCTGTCAAGATACAGTCCATGGCATGTGGAGCGCTGCTTATGTCCTTATTTTCTAAATAAGTTTCTAATTTAGCTTCTTGGAAGTCTCAATGCTTTTATTGTTTGTGCGTTGTGCCACCAGTATTAGGAGATGCATGTGCTATTGAATTACTACTAAACCAAAGCCATTGTGCCTTTTATTTTGCAATTAAATTAAGATTAAAGGGTAGTTTAGTGTTCTTTTCCCGACTTTTGCTGTAGATAAAAAAGGTTGCTTTGATACACAATCTAAAGCCCTGTTTCTCTGTAAATATAATGCATCTTGTGTGACTTTTAACATGTTTATCAAGGCACTGTTTTGTTTGTCACATGACCATTTTATTAACAAAACTACAAAGAATCTTATGCATAATATACAGTACTTGTGTTTTTATTAAATGGCATTAATAAATTAAA

Function

NR:

description
cdc42 effector protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607771.2 False 2512 mRNA 0.49 2 62864201 62874655
XM_021607763.2 False 2487 mRNA 0.49 2 62864214 62874655
XM_036982370.1 True 2469 mRNA 0.46 2 62871947 62874655

Neighbor

gene id symbol gene type direction distance location
cyp1b1 cyp1b1 coding upstream 124209 62735771 ~ 62739992 (+)
polr1b polr1b coding upstream 212239 62631554 ~ 62651962 (+)
LOC110526580 LOC106576805 coding upstream 237491 62621960 ~ 62630539 (+)
LOC110526555 LOC106576807 coding upstream 255773 62585864 ~ 62608428 (+)
LOC110526548 LOC106576808 coding upstream 337899 62505171 ~ 62526302 (+)
LOC110526643 LOC106576799 coding downstream 49334 62923989 ~ 62948072 (+)
ide LOC106576795 coding downstream 109288 62983943 ~ 63030621 (+)
LOC110526678 LOC106576796 coding downstream 200722 63075377 ~ 63145544 (+)
LOC110526701 LOC106576791 coding downstream 350433 63225088 ~ 63239237 (+)
LOC118965245 LOC106576791 coding downstream 364395 63239050 ~ 63245445 (+)
G68555 NA non-coding upstream 198726 62665132 ~ 62665475 (+)
G68547 NA non-coding upstream 205052 62658921 ~ 62659149 (+)
G68530 NA non-coding upstream 243649 62620318 ~ 62620552 (+)
G68478 NA non-coding upstream 246937 62612665 ~ 62617264 (+)
G69507 NA non-coding downstream 8282 62882937 ~ 62883175 (+)
G69511 NA non-coding downstream 15421 62890076 ~ 62890408 (+)
G69516 NA non-coding downstream 21498 62896153 ~ 62896368 (+)
G69517 NA non-coding downstream 22131 62896786 ~ 62897000 (+)
G69519 NA non-coding downstream 23409 62898064 ~ 62898289 (+)
G67930 mcmbp other upstream 1130813 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 1548949 61314874 ~ 61315252 (+)
G66188 NA other upstream 2922137 59941486 ~ 59942064 (+)
G65442 NA other upstream 3539072 59324636 ~ 59325129 (+)
G64338 NA other upstream 4163822 58699296 ~ 58700379 (+)
G70011 NA other downstream 400308 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 1934934 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 3041080 65915581 ~ 65922285 (+)
G73515 NA other downstream 3413024 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 3545840 66417495 ~ 66424081 (+)

Expression


Co-expression Network