LOC110528975 (LOC106577008)


Basic Information

Item Value
gene id LOC110528975
gene name LOC106577008
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73400847 ~ 73418442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611140.2
GGGCCAGTGGAATGCTACGTGTCTTGAGGTCTTTCTACAGTTCTTAGATGACTATCGTCAAAGTTGTCAAGTAACTCGAGCGAGGCGACACATTCCTACCGGTTATTGGACCTTATACTCTCCGGGTCAACAGTCCATTGGGGTTGACCTTAGCCTAGTGCATGATGTTGGGTGTCAAAAAGCAGCAGACGGATCTGAACAGATCCATCAATGTAGTGTTTCAGGCCCACCATGTGACCCGGAGCAAGAGAGGTCAGGTGGTGGGCACTAGAGGAGGCTTCAGGGGTTGCACTGTCTGGCTCACAGGTTTGTCTGGTGCTGGGAAGACCACCATAGCCTTTGCCCTGGAGGAGTATCTGGTGTCCCATGGCATCCCCTGCTACTCACTGGATGGGGACAACATCCGCCATGGCCTCAACAAGAACCTGGGCTTCACAGCCACTGACCGTGAGGAGAACATCAGACGTATTGCTGAGGTGGCCAAGTTGTTCGCAGACGCTGGCCTCGTCTGCATCACCAGCTTCATCTCTCCTTACACCAAGGATCGTGATGATGCGAGGAAGATCCTTGAGAGTGCTGGGTTACCCTTCTTTGAGGTGTTCATCAACGCTCCTCTAGAGGTGTGTGAGAGTCGCGATGTGAAGGGCCTCTACAAGAAAGCCCGTGCTGGAGAGATCAAAGGCTTCACTGGGATCGATGCAGACTATGAGCGGCCCGAGGCTCCGGAGTTGGTGCTGAAAACAGGAGAGGTCACCGTTAACGAGTGCATTCGGCAGGTTGTGGACCTGCTTAGAGAGCAGAGTATTGTTCCAAGTGGAATCACAGAGGAGGTGAATGAACTTTTTGTTCCTGAGAACAAGCTGAAGCTAGTTCAGGTCGACGCTATCACACTTCCTACAATCAGCATCACCAAGTTGGACCTCCAGTGGGTGCAGGTGCTGGCTGAAGGCTGGGCCACCCCACTGAAGGGCTTCATGAGGGAGAGGGAGTTCCTCCAGGTGCAACATTTCGGCAACCTCCTCGACGATGGAACCATCAACCAGTCTATTCCCATCGTCCTGCCTGTTACCACGGAAACCAAGCAGAGGCTGGACGGCTGTGCGGCGATAGCTCTGGAGTTCCAGGGAACCCTTGTGGCCATTCTAAGACAGCCAGAGTTCTACGAACACCGCAAAGAGGAGCGCTGTGCCCGTCAGTGGGGTACCACCTGCCCCCAGCACCCCTACATTAAGATGGTGATGGAGGGAGGTGATTGGCTGGTGGGTGGCGACCTGGAGGTGCTGGACCGAATCAGATGGAACGATGGGCTGGACCAGTACCGCTTTACTCCACGGGAGCTCAAGCAGAAGTTTAAAGAAATGAAAGCAGATGCCATCTTCGCCTTCCAGCTGCGGAATCCGGTCCACAATGGCCACGCCCTGTTGATGCAGGACACCAAGCGCCGCCTTCTGGAGCGAGGCCACAAGCGACCCGTCCTCTTGCTGCACCCGCTGGGGGGCTGGACCAAAGACGACGACGTGCCCCTGGACTGGCGCATGAAACAGCACGCTGCAGTACTGGAGGAGGGGGTACTGGACCCCACCAGCACCATAGTGGCTATTTTCCCATCCCCCATGATGTACGCTGGACCCACTGAGGTCCAGTGGCACTGCAGAGCGCGGATGATCGCCGGAGCTAACTTCTACATTGTGGGTCGTGACCCAGCGGGCATGCCCCATCCCGAGACCAAGCAGGACATTTATGAGCCCACCCATGGGGGAAAGGTCCTCACCATGGCCCCCGGCCTCACCTCTGTAGAGATCATCCCCTTCAGAGTGGCTGCCTACAACAAGACCAAGAGGGCCATGGATTTCTACGACAAGGACCGACACGCTGAGTTTGAGTTCATCTCTGGCACCAGGATGAGAAAGCTGGCGCGGTGCGGGGAGAACCCCCCAGAAGGCTTCATGGCCCCCAAGGCCTGGAAGGTCCTGACTGAGTACTACAGCTCTATACAGAAGGACCAGTAACTCAAAGACCAGAGCTCTTAGAAGATCAACAACTCTAGTCCTCAAGGAATGTTCTAGTTTGATGTTGTTATGTGTTTCATTTCATTATCCCAGTAGATGATTCAGTGAGTAAGGAATCCATTAATGACTGAGATCAAGTGAGACCAAGCAGTCCTGGAGGATTGGAGTTGTGTGCCTATCTTCATTGAATGAAAACCCATGTGATGTCAGAGGAGCTAGTGGTGGAGTTTAAGCAGTGAAAACAGTCCTATGTTTGTCTATGTATCTGTAAATCATTATATTTAAAGAAAAGGTATACATATATGAGATATATTTAATCTTTAGAGACTAACATGTATCCCATGATTTTAAAATGTCTCCCACTCTTCTTATTTTGTGAGATCATTATACAGGAAGTTCCTGATAGTTTTACCTCCCAAAAGCATTTTTGGATATTTAAAGACGTGCCATTTATGATGATGCAGTAAATAAGTTgctggtgatatttaattcaATTTTAACATTTCCCACCTACCTATTTCTATTCCAGATGATTGATTTATCATTGTTATCCAATTTTTTTTTCTTGTATTTTCAAACAAAGCTTTTCATCTTCCAAACGTAAGTGCCTTTTCTTCAGAATGTAAACACTGTttaactactgtactgtataaaATGTCCCTTCGGGTTTCTAAGAAGTTTGATATGAAGAACTATAAATAGCGTTATGATCATCAATAACTCTTGTATGAAAGATGTAAGCCAACTGTAGAGTCTATGCGAAGATTCAAAATGTCAGTGGAGAAATTGTGTGAAGAATGACATTTTATAGAAGAATGAAATTTTATAGAAAAAATCATTAAAACTGTCTCAAATTGAATACTGTATAAACAATGTATATGTCCATACATGAATGTATCAGACAAgattttaaataaatattttattctCAACAAAATCA

Function

NR:

description
bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2-like

GO:

id name namespace
GO:0000103 sulfate assimilation biological_process
GO:0004781 sulfate adenylyltransferase (ATP) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004020 adenylylsulfate kinase activity molecular_function

KEGG:

id description
K13811 PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611140.2 True 2949 mRNA 0.48 12 73400847 73418442

Neighbor

gene id symbol gene type direction distance location
LOC110528965 LOC106577007 coding upstream 1852 73386028 ~ 73398995 (+)
LOC110528891 LOC106577001 coding upstream 317011 72816192 ~ 73083836 (+)
LOC110528917 NA coding upstream 400616 72999236 ~ 73000231 (+)
prokr1b LOC106577087 coding upstream 839788 72545613 ~ 72561059 (+)
pcsk2 pcsk2 coding upstream 892714 72419949 ~ 72508133 (+)
LOC110528986 LOC106577009 coding downstream 14611 73433053 ~ 73450455 (+)
LOC110529004 LOC106577010 coding downstream 59846 73478288 ~ 73485148 (+)
LOC110529026 LOC106577090 coding downstream 133176 73551618 ~ 73553748 (+)
LOC118936305 LOC106577091 coding downstream 152533 73570975 ~ 73573371 (+)
LOC110529036 itprip coding downstream 161729 73580171 ~ 73589533 (+)
G81734 NA non-coding upstream 503 73399572 ~ 73400344 (+)
G81779 NA non-coding upstream 15726 73384811 ~ 73385121 (+)
G81777 NA non-coding upstream 18580 73382041 ~ 73382267 (+)
G81775 NA non-coding upstream 19817 73380547 ~ 73381030 (+)
G81773 NA non-coding upstream 23781 73376857 ~ 73377066 (+)
G81802 NA non-coding downstream 35905 73454347 ~ 73454736 (+)
G81804 NA non-coding downstream 37484 73455926 ~ 73456380 (+)
G81805 NA non-coding downstream 38019 73456461 ~ 73456677 (+)
G81807 NA non-coding downstream 39733 73458175 ~ 73458488 (+)
G82064 NA non-coding downstream 81204 73499646 ~ 73499949 (+)
ccdc85a ccdc85a other upstream 2324745 71036440 ~ 71076239 (+)
G78121 NA other upstream 2745886 70571665 ~ 70654961 (+)
G75747 NA other upstream 5025918 68374505 ~ 68374929 (+)
G74139 NA other upstream 6615878 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 6641863 66756207 ~ 66758984 (+)
G82111 LOC106577091 other downstream 133174 73551616 ~ 73571737 (+)
G83836 NA other downstream 1490783 74909225 ~ 74909806 (+)
G83829 NA other downstream 1694218 75112660 ~ 75114190 (+)
G83979 NA other downstream 1726422 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 3039682 76457821 ~ 76459823 (+)

Expression


Co-expression Network