LOC110529343 (LOC106577035)


Basic Information

Item Value
gene id LOC110529343
gene name LOC106577035
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74975235 ~ 74981532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611479.2
GCGCACACTCCTCCACATAGACCATGTTCTCTATTTTTGTCCTTTCAAACTATTGTTCTCTATTCTACTATGCTTTGGCCTGTCCCGTCATGGCCTCATCTGTTGGGACTCTTCGGGATTAAGTTGCCACATGACCAATCCATCCTTCACTGTGTCGCCGGAGCACGTTTAATTATTCAGGCTCCCCCGCTTTGAGCAGGGCAGAGGCATTCGAAGCCATTTTATTTAGCTTGAACAACCtctttttaaattatataaaaTCACTAAACATTCTTCAAATTCATTTTTGAGGCTGTTTCTCAACCATGGCGCAGGGCATAACAACCGGAGAGAAGTATTGGGAGGATAGAGTAGCCTTCGAAACAGAAGGAGCAGGTCAAGAACATGTGGAATATGATGATGTTTTGGAGTTTAATACATTTGACGGACTACCCTACTCCTCTCGATATTACACATTACTGAAGGAAAGGATGTCTCTACCAGTTTGGAAAGCCAAGTGTGATTTCATGGACAAACTGGCCAACAAGCAGTTTGTTATTGTCTCTGGCACTGCAAAAACTGGCAGAAGCTGTCAGATCCCCCAGTGGTGTGCAGAgttctgcctgtctgtccagTACCAGAATGGCATGGTGGTGTGCACCCAGGACCACAGGCAACACACAGTGGATCTGGCCCTGCGTGTAGCTGATGAGATGGACGTCAACATCGGCCATGAAGTGGGCTACAGCATCCCTCTAGAGACATGCTGCTCTAGTGACACTGTTCTCAGGTACTGCACTAGCGACATGCTGCTCAGAGAGATGATGTCAGACCCCATGCTGGAGCACTACGGTGTCATCGTCATTGACCAGGCCCATGAGAGGACGGTCAGTACAGACGTTCTGCTGGGCCTGCTCACAGACATCGCCCTGCAGAGGCCCGAGCTCCGTGTGGTGCTCCTCACAGCTACACACCCAGGACCCAAACTACTGGGCCACTACAGGAATGTCCCACTGATCCAGCTGGAGGGCGTGTGTTCAGCGGAGGCGGTGTATACTGGTACCAGCCACAAGGACTACTTCTGCTCTGCCCTGCGACTGGTTCTGGAGATACACCACTCCCAAGAGGAAGGGGACATTGTTGTGTTTTTGGCCACAACTCAAGAGATAGATCTTGCCCGCGATATCCTCAATACATCTCCACATCTAGGGGAACTTCTTCCTATCTCGGTGCACCCTGGGCTGGGTGGGACTCTGCCCATGCCAAGTGAAGAGGACGGCCGGTGCAGAAGAGTCTTCCTCACCTCCAGTCCAAACGAAGACCTCTTTTGGGCTGTGCACAAGCTGAACTTTGTCATCGATGCCGGTGTCCAGAAAAGAAATGTTTATAACCCTAGGATCAGGGCGAACTCAGTCGCCATTCAACCTATCAGTAGGAGTCAAGCAGAGAGCCGCAAACAGCTTGTAGGACCAACAGGGAAGAGTTTCTGTCTGTACCCAGAGGACACACCCCTGCCCAGCGAGACACGCCCCCACATCCTGGAGTCTGACATCACGTCCACCGTGCTCTTCCTGAAGAGGATGGACATCGGTGGCCTGGGCCGCTGTGACTTCATCGACAGGCCAGATCCTGAAGGTCTGATGCAGGCTTTAGAGGAACTGGACTACCTAGCAGCCCTTGATGACGATGGGAACCTGTCAGAGATCGGCATCATCATGTCTGAATTTCCCCTGGAGCCCCAGATGGCCAAGACACTACTTGCCTCCTGCGAGTTTGACTGTGTCAGCGAGATGACCACCATCGCCGCCATGCTGGCAGCACCAAGCTGCTACCTGGTCCCCTCAATGGAGTTGAGGCTAGAGGCCTCTCAGTGTCACCTTAAGTTCCAGCACCCAGAAGGAGATCACTTCACCCTAATCAACATCTACAAGGCTTTCAAACAGAACCAGCAGGAGCCCTTTGTCAGTGTGGAGAAGTGGTGTCAGGACTACTTCCTGAGTCTGTCTGCCCTGCAGACGGCTGATGCTATCCGCTCTGAGCTGACTGACATCCTGAGGAGGATAGAGCTGCCTGTCTCCATGCCTTCCTTTGGTTCCAAGGGAAACATAATCAACATCAAGAGAGCGCTGTTAGCCGGCTTCTTCATGCAGGTGGCGAGGGATGTGGACTCATCAGGGAATTATTTCATGTTGACGCACAAACACGTGGCCCAGATTCACCCTCTCTCTGCCTACGGCACCAAGACGCCCAAACTGGGCCTGCCGGAGTGGGTCCTCTTCCATGAGTACACCTTCTCAGAGGACAACTGCATTCGCACCGTGTCCCACATATCACCAGAGGAgttcaTTCAGATGGCTCCACAGTACttcttctttaacctgcctcccAGTGAAAGCAAGGACATCCTCCAGAACATCTTAGACAAGGGAGCTGAACACTACAAAGCAAAGAAGATTAAAAAGAGCCCCAGCCTAGACAGCATACCAGAAGTCACAGCTAGTTGTGTCATACAGTGATTGTGAATGCCTTGGATGGGGACCTCTTTAGAGGCAGAAACGCCCTACTCATTCCCTGGTACATTATATGATCATGCTCACCAGTGTTACTTTTGTGTCATTGAAACTTAGAATCATGTCAAAATGTCAGGCTATAAAAATTCATATAATTCCATTTGTTAATCACTTGCATTTATATATAGGAAAAGAGTGACTGTCCAGATTTCCAATGTGTTTGTTTTAGTGATATTTATATAGACAGTCCATgtacctgtatgtgttatttttTGGAACTTGCACTTTAATAATAAATACACCTCTAAAAATTGA
>XM_036985284.1
CTCTCGATATTACACATTACTGAAGGAAAGGATGTCTCTACCAGTTTGGAAAGCCAAGTGTGATTTCATGGACAAACTGGCCAACAAGCAGTTTGTTATTGTCTCTGGCACTGCAAAAACTGGCAGAAGCTGTCAGTACTGAACCAATGCACACTTCAGGAAAAAAGAAAGATTGTCCAACTGATCCCCCAGTGGTGTGCAGAgttctgcctgtctgtccagTACCAGAATGGCATGGTGGTGTGCACCCAGGACCACAGGCAACACACAGTGGATCTGGCCCTGCGTGTAGCTGATGAGATGGACGTCAACATCGGCCATGAAGTGGGCTACAGCATCCCTCTAGAGACATGCTGCTCTAGTGACACTGTTCTCAGGTACTGCACTAGCGACATGCTGCTCAGAGAGATGATGTCAGACCCCATGCTGGAGCACTACGGTGTCATCGTCATTGACCAGGCCCATGAGAGGACGGTCAGTACAGACGTTCTGCTGGGCCTGCTCACAGACATCGCCCTGCAGAGGCCCGAGCTCCGTGTGGTGCTCCTCACAGCTACACACCCAGGACCCAAACTACTGGGCCACTACAGGAATGTCCCACTGATCCAGCTGGAGGGCGTGTGTTCAGCGGAGGCGGTGTATACTGGTACCAGCCACAAGGACTACTTCTGCTCTGCCCTGCGACTGGTTCTGGAGATACACCACTCCCAAGAGGAAGGGGACATTGTTGTGTTTTTGGCCACAACTCAAGAGATAGATCTTGCCCGCGATATCCTCAATACATCTCCACATCTAGGGGAACTTCTTCCTATCTCGGTGCACCCTGGGCTGGGTGGGACTCTGCCCATGCCAAGTGAAGAGGACGGCCGGTGCAGAAGAGTCTTCCTCACCTCCAGTCCAAACGAAGACCTCTTTTGGGCTGTGCACAAGCTGAACTTTGTCATCGATGCCGGTGTCCAGAAAAGAAATGTTTATAACCCTAGGATCAGGGCGAACTCAGTCGCCATTCAACCTATCAGTAGGAGTCAAGCAGAGAGCCGCAAACAGCTTGTAGGACCAACAGGGAAGAGTTTCTGTCTGTACCCAGAGGACACACCCCTGCCCAGCGAGACACGCCCCCACATCCTGGAGTCTGACATCACGTCCACCGTGCTCTTCCTGAAGAGGATGGACATCGGTGGCCTGGGCCGCTGTGACTTCATCGACAGGCCAGATCCTGAAGGTCTGATGCAGGCTTTAGAGGAACTGGACTACCTAGCAGCCCTTGATGACGATGGGAACCTGTCAGAGATCGGCATCATCATGTCTGAATTTCCCCTGGAGCCCCAGATGGCCAAGACACTACTTGCCTCCTGCGAGTTTGACTGTGTCAGCGAGATGACCACCATCGCCGCCATGCTGGCAGCACCAAGCTGCTACCTGGTCCCCTCAATGGAGTTGAGGCTAGAGGCCTCTCAGTGTCACCTTAAGTTCCAGCACCCAGAAGGAGATCACTTCACCCTAATCAACATCTACAAGGCTTTCAAACAGAACCAGCAGGAGCCCTTTGTCAGTGTGGAGAAGTGGTGTCAGGACTACTTCCTGAGTCTGTCTGCCCTGCAGACGGCTGATGCTATCCGCTCTGAGCTGACTGACATCCTGAGGAGGATAGAGCTGCCTGTCTCCATGCCTTCCTTTGGTTCCAAGGGAAACATAATCAACATCAAGAGAGCGCTGTTAGCCGGCTTCTTCATGCAGGTGGCGAGGGATGTGGACTCATCAGGGAATTATTTCATGTTGACGCACAAACACGTGGCCCAGATTCACCCTCTCTCTGCCTACGGCACCAAGACGCCCAAACTGGGCCTGCCGGAGTGGGTCCTCTTCCATGAGTACACCTTCTCAGAGGACAACTGCATTCGCACCGTGTCCCACATATCACCAGAGGAgttcaTTCAGATGGCTCCACAGTACttcttctttaacctgcctcccAGTGAAAGCAAGGACATCCTCCAGAACATCTTAGACAAGGGAGCTGAACACTACAAAGCAAAGAAGATTAAAAAGAGCCCCAGCCTAGACAGCATACCAGAAGTCACAGCTAGTTGTGTCATACAGTGATTGTGAATGCCTTGGATGGGGACCTCTTTAGAGGCAGAAACGCCCTACTCATTCCCTGGTACATTATATGATCATGCTCACCAGTGTTACTTTTGTGTCATTGAAACTTAGAATCATGTCAAAATGTCAGGCTATAAAAATTCATATAATTCCATTTGTTAATCACTTGCATTTATATATAGGAAAAGAGTGACTGTCCAGATTTCCAATGTGTTTGTTTTAGTGATATTTATATAGACAGTCCATgtacctgtatgtgttatttttTGGAACTTGCACTTTAATAATAAATACACCTCTAAAAATTGA

Function

NR:

description
putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611479.2 False 2804 mRNA 0.50 11 74975235 74981532
XM_036985284.1 True 2412 mRNA 0.50 12 74975674 74981532

Neighbor

gene id symbol gene type direction distance location
LOC110529328 adam12 coding upstream 9380 74817707 ~ 74965855 (+)
c1h10orf90 cssa18h10orf90 coding upstream 162759 74792556 ~ 74812476 (+)
insyn2a fam196a coding upstream 265949 74682034 ~ 74709286 (+)
LOC118966714 NA coding upstream 318371 74656556 ~ 74656864 (+)
ebf3a LOC106577027 coding upstream 632640 74268680 ~ 74342595 (+)
LOC110529380 LOC106577038 coding downstream 15251 74996783 ~ 75112403 (+)
LOC110529425 LOC106577041 coding downstream 173636 75155168 ~ 75182737 (+)
LOC110532673 LOC106577093 coding downstream 249206 75230738 ~ 75233988 (+)
LOC110529439 LOC106577042 coding downstream 294453 75275985 ~ 75311494 (+)
LOC110529485 LOC106577045 coding downstream 553470 75535002 ~ 75539343 (+)
G83755 NA non-coding upstream 4606 74968428 ~ 74970629 (+)
G83858 NA non-coding upstream 42657 74932111 ~ 74932578 (+)
G83848 NA non-coding upstream 61540 74913481 ~ 74913695 (+)
G83847 NA non-coding upstream 62560 74912356 ~ 74912675 (+)
G83846 NA non-coding upstream 63248 74911780 ~ 74911987 (+)
G83830 NA non-coding downstream 153550 75135082 ~ 75137791 (+)
G83976 NA non-coding downstream 158997 75140529 ~ 75140814 (+)
G83977 NA non-coding downstream 159344 75140876 ~ 75142233 (+)
G83978 NA non-coding downstream 162384 75143916 ~ 75144255 (+)
G83980 NA non-coding downstream 164117 75145649 ~ 75145883 (+)
G83836 NA other upstream 65429 74909225 ~ 74909806 (+)
G82111 LOC106577091 other upstream 1403498 73551616 ~ 73571737 (+)
ccdc85a ccdc85a other upstream 3899133 71036440 ~ 71076239 (+)
G78121 NA other upstream 4320274 70571665 ~ 70654961 (+)
G75747 NA other upstream 6600306 68374505 ~ 68374929 (+)
G83829 NA other downstream 131128 75112660 ~ 75114190 (+)
G83979 NA other downstream 163332 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 1476592 76457821 ~ 76459823 (+)
G86019 NA other downstream 1650213 76631745 ~ 76635936 (+)
G86614 NA other downstream 2142403 77123935 ~ 77124427 (+)

Expression


Co-expression Network