LOC110532927 (LOC106577426)


Basic Information

Item Value
gene id LOC110532927
gene name LOC106577426
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90482721 ~ 90498148 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990051.1
ATGGAACCCTGCCTAGCACCGGCCAGTCGGCTGTGGAGAGCCGACACGGTGGCGGAacctccaccagaccagagcGGAGTCCGGCTACTGGggtggaagaaaaataaaaaGTCCTATAAAGTCTGGAGCCTGGCACACTCCAGCTGCCGTCGCTGTCACCAACGTTACAGTATGCTGCCTGCCGTGGTGAAGCTCTGCTGTGGAATCTCCTACCCTCACCTCAGGACCATGGCAGGACTGCAACGGCTAGCTATCGCAGCGATTGGCCAGGAGCTAGCTCACATGCAGAGGAATGGGCAGAGCCAACTACCAGCATGGACCAGCCATATGGGTTGGCAGACTGGTACCGCTCAGCATCAACACAGTGAGAGCTCCAGAAGAGAGGTAGTCAACCCAGTCCCATTGAAAGAGGAGGAGCTGCTGTACATAAGGAGTGGGCACGAGGCGCTGACCAAGGCTCTGGACATTGTTGACGATAAGAATGGATGGAAAACAGAACTCACAGAGGAGAACGGAGATGTTATATACAGTAAAGTGCTGTCTGGGGACAGGAAGGTCTTCAGACTGGAGACTGTGTTAGACGCCACGCCAGAAGAGATACATCACATCCTGTGGAAGGTGGAAGAGATGCACCAGTGGAACCCAAGCATCAAAAACATCAAGGTTCTGAAGCAAGCTGGCCCGGAAACCATGGTTACGCACGAGGTGTCAGCAGAGACAGCCGGCAACCTGATAGGCCAGAGAGACTTCCTGAGTGTGAGACACTTCTCCAGACAGGAGTCATGTATCTATCTGGGGGGAGCAGCCACGCACCTGGAGTCCTTCCCTCCTCAGAAAGGCTTCGTCAGAGCGGAGGACGGCCCAACGTGTATTATCATCGAGCCCCTGGCAGACGACGGAGGCAGGAGCCACTTTACGTGGCTCCTCAACATGGATGTCAAGGTagatttcttttcattttaa

Function

NR:

description
PREDICTED: steroidogenic acute regulatory protein, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990051.1 True 963 mRNA 0.54 7 90482721 90498148

Neighbor

gene id symbol gene type direction distance location
LOC110515024 LOC106613759 coding downstream 326403 90151430 ~ 90156318 (-)
LOC110515023 LOC106594692 coding downstream 332022 90142444 ~ 90150699 (-)
LOC110515022 LOC106560865 coding downstream 340891 90116501 ~ 90141830 (-)
LOC118936688 LOC106577347 coding downstream 366879 90109296 ~ 90115842 (-)
LOC110519290 cj104 coding downstream 562263 89912298 ~ 89920458 (-)
LOC110531748 polr3a coding upstream 50092 90548240 ~ 90602774 (-)
LOC118966735 LOC106564289 coding upstream 147830 90645978 ~ 90657019 (-)
LOC118966736 LOC106585883 coding upstream 195431 90693579 ~ 90695233 (-)
LOC118966737 LOC106577420 coding upstream 197133 90695281 ~ 90696935 (-)
LOC118966738 LOC106594844 coding upstream 247245 90745393 ~ 90746606 (-)
G100161 NA non-coding downstream 9824 90472605 ~ 90472897 (-)
G100160 NA non-coding downstream 11104 90471263 ~ 90471617 (-)
G100159 NA non-coding downstream 11594 90470855 ~ 90471127 (-)
G100150 NA non-coding downstream 24685 90457023 ~ 90458036 (-)
G100145 NA non-coding downstream 33590 90447211 ~ 90449131 (-)
G100169 NA non-coding upstream 8620 90506768 ~ 90507403 (-)
G100172 NA non-coding upstream 27196 90525344 ~ 90525632 (-)
G100192 NA non-coding upstream 66653 90564801 ~ 90565944 (-)
G100207 NA non-coding upstream 77384 90575532 ~ 90576252 (-)
G100215 NA non-coding upstream 83016 90581164 ~ 90581386 (-)
G99602 NA other downstream 518516 89963873 ~ 89964205 (-)
G99595 NA other downstream 524805 89957392 ~ 89957916 (-)
G99035 NA other downstream 1192665 89287214 ~ 89290056 (-)
ghitm LOC100136239 other downstream 1230633 89223150 ~ 89270371 (-)
G98878 NA other downstream 1406483 89075847 ~ 89076238 (-)
G100197 NA other upstream 129385 90625080 ~ 90858972 (-)
LOC110516041 jakmip3 other upstream 484587 90982735 ~ 91072716 (-)
G100582 NA other upstream 734592 91232740 ~ 91233788 (-)
LOC110531398 glrx3 other upstream 1294431 91791792 ~ 91832379 (-)
G102060 NA other upstream 2093433 92591581 ~ 92595514 (-)

Expression


Co-expression Network