G396


Basic Information

Item Value
gene id G396
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 463502 ~ 464018 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU475
ttaaataaaggtttttaaaaaatggtggtggcagcatcatgctgtggggatgtttctcagggACTGAGAATTAGTCAATTAATCATCAAGCCGTTGACTAATTAAATCAAGTGTACCAGTTTAGGGTTAAGCAAAAGTGAAACTTCTTGGGGGTGAGGAGTGGGTTGGGAAACTCTGATCTTGATGACTGTATTGAAGCCAAcacctccatcttggctctcccccACCATTGCGTTTAACCCAacacCTCCATCTTGGTACTCCCCCACCATTGTGTTTAAGCCAAcacctccatcttggctctccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475 True 307 lncRNA 0.35 2 463502 464018

Neighbor

gene id symbol gene type direction distance location
LOC110532027 tomm70 coding upstream 42269 384207 ~ 421233 (+)
nit2 nit2 coding downstream 138085 602103 ~ 617595 (+)
slc9a7 slc9a7 coding downstream 317822 781840 ~ 1244153 (+)
tubgcp5 tubgcp5 coding downstream 625378 1089396 ~ 1133908 (+)
cyfip1 LOC106590724 coding downstream 709693 1173711 ~ 1300624 (+)
LOC118964682 NA coding downstream 863304 1327322 ~ 1328266 (+)
G376 NA non-coding upstream 27707 435513 ~ 435795 (+)
G373 NA non-coding upstream 30867 431661 ~ 432635 (+)
G370 NA non-coding upstream 39734 423535 ~ 423768 (+)
G369 NA non-coding upstream 39990 423216 ~ 423512 (+)
G357 NA non-coding upstream 68270 393425 ~ 395232 (+)
G391 NA non-coding downstream 869 464887 ~ 466528 (+)
G399 NA non-coding downstream 10205 474223 ~ 474581 (+)
G420 NA non-coding downstream 93369 557387 ~ 557594 (+)
G447 NA non-coding downstream 148636 612654 ~ 616251 (+)
G456 LOC106574112 non-coding downstream 167948 631966 ~ 633986 (+)
G166 NA other upstream 143528 318047 ~ 319974 (+)
G51 NA other upstream 333239 120466 ~ 130263 (+)
G50 NA other upstream 343195 112959 ~ 120307 (+)
G26 NA other upstream 369784 56555 ~ 93718 (+)
G19 NA other upstream 391203 52711 ~ 72299 (+)
G583 NA other downstream 539765 1003783 ~ 1010207 (+)
G961 NA other downstream 1614880 2078898 ~ 2079603 (+)
G998 LOC106576565 other downstream 1794865 2258883 ~ 2305334 (+)
G2016 NA other downstream 2180317 2644335 ~ 2645169 (+)
G2343 NA other downstream 2750679 3214697 ~ 3216234 (+)

Expression


Co-expression Network