G1000


Basic Information

Item Value
gene id G1000
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2222169 ~ 2226952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1270
tctctctgtttagtgttgtcttaggtatctctgtctagtgttgtcttaagtctctctgtctagtattgtcttaggtctctctctctctgtcttaggtctctctctctctgtctagtgttgtcttaggtctctctgtctagtgttgtcttaggactctctctctagtgttgtcttaggtctctctgtttagtgttgtcttaggtctctctgtttagtgttgtcttaggtctctctgtctagtgttgtcttaggtctctctctctgtctagtgttgtcttaggtctctctgtttagtgttgtcttaggtatctctgtctagtgttgtcttaggtctctctctctctgtttagtgttgtcttaggtctctctctctctgtctagtgttgtcttaggtctctctctctctgtctagtgttgtcttaggtctctctgtctagtgttgtcttagctctctctctctctgtctagtgttgtcttaggtctctctgtctagtgttgtcttaggtctctctctctctctgtctagtgttgtcttaggtctctctgtctagtgttgtcttaggtctctctctctctctctgtctagtgttgtcttaggtctctctctctctctgtctagtgttgtcttaggtctctctctctctctgtctagtgttgtcttaggtctctctctctctgtttagtgttgtcttaggtctctctctctgtctagtgttgtcttaggtctctctctctgtctagtgttgtcttaggtctctctctctctgtctagtgttgtcttaggtctctctctctctgtctagtgttgtcttaggtctctctctctgtctagtgttgtcttaggtctctctgtctagtgttgtcttagctctctctctctctgtct

Function

NR:

description
Collagen-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1270 True 886 lncRNA 0.35 3 2222169 2226952

Neighbor

gene id symbol gene type direction distance location
dpt LOC106574207 coding upstream 29274 2176672 ~ 2192895 (+)
nme7 at233 coding upstream 123485 1984326 ~ 2101039 (+)
tmem131 LOC102783117 coding upstream 254593 1859377 ~ 1967576 (+)
LOC110520782 LOC106574119 coding upstream 451735 1732789 ~ 1770434 (+)
atp10a atp10a coding upstream 625550 1460067 ~ 1596619 (+)
LOC110531937 LOC106574099 coding downstream 311382 2538334 ~ 2580308 (+)
LOC118966170 NA coding downstream 1172474 3399426 ~ 3400148 (+)
bcl6aa LOC106574104 coding downstream 1375711 3602663 ~ 3624582 (+)
LOC118965227 NA coding downstream 1596184 3822517 ~ 3826226 (+)
trnap-cgg NA coding downstream 1620671 3847623 ~ 3847694 (+)
G1013 NA non-coding upstream 28452 2193354 ~ 2193717 (+)
G1008 NA non-coding upstream 43129 2178498 ~ 2179040 (+)
G996 NA non-coding upstream 55351 2166235 ~ 2166818 (+)
G985 NA non-coding upstream 80102 2141835 ~ 2142067 (+)
G983 NA non-coding upstream 81673 2140290 ~ 2140496 (+)
G1030 NA non-coding downstream 7581 2234533 ~ 2238220 (+)
G998 LOC106576565 non-coding downstream 31931 2258883 ~ 2305334 (+)
G1069 NA non-coding downstream 86201 2313153 ~ 2313914 (+)
G1083 NA non-coding downstream 109493 2336445 ~ 2338735 (+)
G1085 NA non-coding downstream 112488 2339440 ~ 2340422 (+)
G961 NA other upstream 142566 2078898 ~ 2079603 (+)
G583 NA other upstream 1211962 1003783 ~ 1010207 (+)
G166 NA other upstream 1902195 318047 ~ 319974 (+)
G51 NA other upstream 2091906 120466 ~ 130263 (+)
G50 NA other upstream 2101862 112959 ~ 120307 (+)
G2016 NA other downstream 417383 2644335 ~ 2645169 (+)
G2343 NA other downstream 987745 3214697 ~ 3216234 (+)
G2464 NA other downstream 1276317 3503269 ~ 3503581 (+)
G3176 NA other downstream 1948371 4175323 ~ 4178073 (+)

Expression


Co-expression Network