G1083


Basic Information

Item Value
gene id G1083
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2336445 ~ 2338735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1375
GCTCAGGATATGTAgataataaaatcaaatcaaagtttatttgtcacgtgcgccgaatacaacaggtgtagtagacctcacagtgaaatgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtagaccttacagtgaaatgctgaatacaacaggtagaccttacagtgaaatgctgaatacaacaggtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtagaccttacagtggaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaaagctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtaggtagacctcacagtgaaatgcttacttacaggctctaaccaatagtgcaaaaaaggtgttaggtgaacaataggtaggtaaagaaataaaacaacagtaaaaagacaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctacatacagtagagagactatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagactatatacagtagagaggctatatacagtagagactatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctacatacagtagagaggctacatacagtagagaggctatatacagtagaggctatatacagtagagaggctacatacagtagagaggctacatacagtagagaggctacatacagtagagaggctatatacagtagaggctatatacagtagagaggctatatacagtagaggctatatacagtggagaggctatatacagtagagaggctatatacagtagagacatatatacagtagagacattaatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggatatatacattagagaggctacatacagtagagaggctatatacagacactggttagtcaggctgattgaggtagtatgtacatgtaggtatggttaaagtgactgtgcgtatatgatgaacagagagtagc

Function

NR:

description
PREDICTED: uncharacterized protein LOC107378213

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1375 True 1594 lncRNA 0.57 6 2336445 2338735

Neighbor

gene id symbol gene type direction distance location
zbtb11 LOC106560622 coding upstream 78120 2212135 ~ 2258325 (+)
dpt LOC106574207 coding upstream 143550 2176672 ~ 2192895 (+)
nme7 at233 coding upstream 237761 1984326 ~ 2101039 (+)
tmem131 LOC102783117 coding upstream 368869 1859377 ~ 1967576 (+)
LOC110520782 LOC106574119 coding upstream 566011 1732789 ~ 1770434 (+)
LOC110531937 LOC106574099 coding downstream 199599 2538334 ~ 2580308 (+)
LOC118966170 NA coding downstream 1060691 3399426 ~ 3400148 (+)
bcl6aa LOC106574104 coding downstream 1263928 3602663 ~ 3624582 (+)
LOC118965227 NA coding downstream 1484401 3822517 ~ 3826226 (+)
trnap-cgg NA coding downstream 1508888 3847623 ~ 3847694 (+)
G1069 NA non-coding upstream 22531 2313153 ~ 2313914 (+)
G998 LOC106576565 non-coding upstream 31111 2258883 ~ 2305334 (+)
G1030 NA non-coding upstream 98225 2234533 ~ 2238220 (+)
G1028 NA non-coding upstream 107702 2225792 ~ 2228743 (+)
G1002 NA non-coding upstream 110714 2224035 ~ 2225731 (+)
G1085 NA non-coding downstream 705 2339440 ~ 2340422 (+)
G1094 NA non-coding downstream 18947 2357682 ~ 2358726 (+)
G1115 NA non-coding downstream 54059 2392794 ~ 2396261 (+)
G1929 NA non-coding downstream 97120 2435855 ~ 2436107 (+)
G1934 NA non-coding downstream 113114 2451849 ~ 2452063 (+)
G961 NA other upstream 256842 2078898 ~ 2079603 (+)
G583 NA other upstream 1326238 1003783 ~ 1010207 (+)
G166 NA other upstream 2016471 318047 ~ 319974 (+)
G51 NA other upstream 2206182 120466 ~ 130263 (+)
G2016 NA other downstream 305600 2644335 ~ 2645169 (+)
G2343 NA other downstream 875962 3214697 ~ 3216234 (+)
G2464 NA other downstream 1164534 3503269 ~ 3503581 (+)
G3176 NA other downstream 1836588 4175323 ~ 4178073 (+)
G3234 NA other downstream 2060169 4398904 ~ 4399444 (+)

Expression


Co-expression Network