G1961


Basic Information

Item Value
gene id G1961
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2537525 ~ 2537754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2566
gcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgccctctgtcattgccaacaaagggtgtataacaaagtattgagataaacttttgttattgaccaaatactgcaaattatggtggaaaataaattcataaaaaatcccatTCCCAAAAtctcattttttctgtcatagttgaagtgtacctatgatgaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2566 True 230 lncRNA 0.43 1 2537525 2537754

Neighbor

gene id symbol gene type direction distance location
zbtb11 LOC106560622 coding upstream 279200 2212135 ~ 2258325 (+)
dpt LOC106574207 coding upstream 344630 2176672 ~ 2192895 (+)
nme7 at233 coding upstream 438841 1984326 ~ 2101039 (+)
tmem131 LOC102783117 coding upstream 569949 1859377 ~ 1967576 (+)
LOC110520782 LOC106574119 coding upstream 767091 1732789 ~ 1770434 (+)
LOC110531937 LOC106574099 coding downstream 580 2538334 ~ 2580308 (+)
LOC118966170 NA coding downstream 861672 3399426 ~ 3400148 (+)
bcl6aa LOC106574104 coding downstream 1064909 3602663 ~ 3624582 (+)
LOC118965227 NA coding downstream 1285382 3822517 ~ 3826226 (+)
trnap-cgg NA coding downstream 1309869 3847623 ~ 3847694 (+)
G1959 NA non-coding upstream 481 2536747 ~ 2537044 (+)
G1958 NA non-coding upstream 1064 2536145 ~ 2536461 (+)
G1957 NA non-coding upstream 1730 2535583 ~ 2535795 (+)
G1936 NA non-coding upstream 3858 2456072 ~ 2533667 (+)
G1942 NA non-coding upstream 5208 2531549 ~ 2532317 (+)
G2004 LOC106574222 non-coding downstream 78815 2616569 ~ 2618562 (+)
G2018 NA non-coding downstream 110273 2648027 ~ 2656615 (+)
G2084 NA non-coding downstream 245013 2782767 ~ 2784184 (+)
G2068 NA non-coding downstream 249064 2786818 ~ 2798145 (+)
G2223 NA non-coding downstream 278536 2816290 ~ 2816626 (+)
G998 LOC106576565 other upstream 273960 2258883 ~ 2305334 (+)
G961 NA other upstream 457922 2078898 ~ 2079603 (+)
G583 NA other upstream 1527318 1003783 ~ 1010207 (+)
G166 NA other upstream 2217551 318047 ~ 319974 (+)
G51 NA other upstream 2407262 120466 ~ 130263 (+)
G2016 NA other downstream 106581 2644335 ~ 2645169 (+)
G2343 NA other downstream 676943 3214697 ~ 3216234 (+)
G2464 NA other downstream 965515 3503269 ~ 3503581 (+)
G3176 NA other downstream 1637569 4175323 ~ 4178073 (+)
G3234 NA other downstream 1861150 4398904 ~ 4399444 (+)

Expression


Co-expression Network