G2514


Basic Information

Item Value
gene id G2514
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3632338 ~ 3640955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU3256
CAGGATTTAAACAAGGTTTATTTACACATCAAAAAGGGCGATGTAAATAATATGAGTCTTTACAAgctcaaaacaggtttttagaaaggaAAAGAAGAGCAGAGAATATTCTCCTCAGAAGGAGAACATATTCATTCTGGACACCGCTTCTCAAggacatcaataaaataaaattaaaaaaacaggCAGAATCTGGTCGTTTCTGACATCAGCAAATAGTGGCGCCGAACAGAGAAATGAAAGTATTGGAGGTCCGAATGTTTACAAAACAGGAGGGTAGCAAAGAGCTGGGAGACCTTAGTTGGCATTTGAGGTAAGTGACACTGAAGCACTGCAATACCAATGTGGCAAAATAGGGTCGACAAGGAACACATCAGGGGCTTCTATGCAAACAGATTTCATTTTGATACCCGAATGATTGTTTACAACCGAACTAAAAACCATCTCTGTCCATCtttcaaaccccccccccccccccccccccccagccatgatgtcattgtgttaaAGCGTCATTGCTTCTGCTGCAGTGCCTCCTTGCGAGCAGCGTCCTGTAACAGCTGAGTGTCAACCTCATCGGCAGGCAGTTGGACGTACCGCACCACAGAGCCTCGGATGAAACAGTTCTTCACTGATAACATATGTGGATACTTCTCTGGATCCGTGACACTGATGTCCGTCAGTTTAATGTTCAGGTACTGATCAACCGAGTGAAGTGTTCCACAGATGCTCAAGTCATTTTTGAGCTCCACCACCACGTCCTTCCCCACCAGGGACTTGAAAAAGGAGTAGAAAAGCATTTTCAGTTTTCAGCGCTGCTTCCTCGTCTCAGGTTGATGATGTCACGACGATACCATTTGGTCGGTTTTAAAATACGTCATGATTGTGGAAGAAACATTTGTGA

Function

NR:

description
U6 snRNA-associated Sm-like protein LSm2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU3256 True 904 lncRNA 0.46 5 3632338 3640955

Neighbor

gene id symbol gene type direction distance location
bcl6aa LOC106574104 coding upstream 7756 3602663 ~ 3624582 (+)
LOC118966170 NA coding upstream 232190 3399426 ~ 3400148 (+)
LOC110531937 LOC106574099 coding upstream 1052030 2538334 ~ 2580308 (+)
zbtb11 LOC106560622 coding upstream 1374013 2212135 ~ 2258325 (+)
dpt LOC106574207 coding upstream 1439443 2176672 ~ 2192895 (+)
LOC118965227 NA coding downstream 182181 3822517 ~ 3826226 (+)
trnap-cgg NA coding downstream 206668 3847623 ~ 3847694 (+)
trnap-ugg NA coding downstream 206933 3847888 ~ 3847959 (+)
im:7152348 LOC106573986 coding downstream 207562 3848517 ~ 3853009 (+)
agxta LOC105025628 coding downstream 1307772 4948727 ~ 4957086 (+)
G2481 NA non-coding upstream 84399 3547343 ~ 3547939 (+)
G2440 NA non-coding upstream 103677 3437268 ~ 3528661 (+)
G2459 NA non-coding upstream 154991 3476409 ~ 3477347 (+)
G2446 NA non-coding upstream 178200 3452983 ~ 3454138 (+)
G2401 NA non-coding upstream 272274 3357806 ~ 3360064 (+)
G2426 NA non-coding downstream 9161 3650116 ~ 3672502 (+)
G2559 NA non-coding downstream 115268 3756223 ~ 3764597 (+)
G2570 NA non-coding downstream 139334 3780289 ~ 3780678 (+)
G2585 NA non-coding downstream 172961 3813916 ~ 3814205 (+)
G2464 NA other upstream 128757 3503269 ~ 3503581 (+)
G2343 NA other upstream 416104 3214697 ~ 3216234 (+)
G2016 NA other upstream 987169 2644335 ~ 2645169 (+)
G998 LOC106576565 other upstream 1368773 2258883 ~ 2305334 (+)
G961 NA other upstream 1552735 2078898 ~ 2079603 (+)
G3176 NA other downstream 534368 4175323 ~ 4178073 (+)
G3234 NA other downstream 757949 4398904 ~ 4399444 (+)
G3351 NA other downstream 799011 4439966 ~ 4441908 (+)
G3596 NA other downstream 1213566 4854521 ~ 4856248 (+)
G3597 NA other downstream 1215570 4856525 ~ 4857065 (+)

Expression


Co-expression Network