G2524


Basic Information

Item Value
gene id G2524
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3634581 ~ 3636505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU3266
gcgatgagacaaggatatccctgccggccaaaccctccctaacccagacgacggttctcccagtcacggccggctgcgacagagtctgggctcgaacccagagtctctggtggcacagctagcactgcgatgcagtgccttagaccactgcgccacccgggaggcccgtgcctttcttcgtctagctctgtcatctagctctgtctttcatcgtctagctctgtcatctagctctgtctttcatcgtctagctctgtcatcatctagctctgtctttcatcgtctagctctgtcatcatctagctctgtctttcatcgtctagctctgtctttcatcgtctagctctgtctttcatcgtctagctctgtctttcatcgtcttgctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctttcatcgtctagctctgtctgtcttcatctagcgctctgtctttcttcgtctagctctgtctttgtctagctctgtctgtcttcgtctagctctgtctgtcttcgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctgtcttcgtctagctctgtctgtcttcgtctagctctgtctgtcttcgtctagctctgtctttcttcgtctagctctgtctttcattgTCTAGCTCTGCCTTtcttcgtctagctctgtctgtcttcgtctagctctgcctgtctttcttcatctagctctgcctggcttcgtctagctctgtctttcattgtctagctctgtctttcattgtctagctctgtctgtcttcatctagcgctctgtctttcatcgtctagctctgtctttcttcgtctatctctgtctttcttcgtctatctctgtctttgtctagctctgtctgtctttgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctttcattgtctagctctgtctttcattgTCTAGCTCTGCCTTTCTT
>TU3267
tcttcgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctgtcttcatctagcGCTCTGTCtttgtctagctctgtctttgtctagctctgtctttgtctagctctgtctttgtctagctctgtctgtctttgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctgtcttcgtctagctctgtctttcttcgtctagctctgtctttcattgtctagctctgtcttcgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctgtcttcgtctagctctgtctgtcttcgtctagctctgtctgtcttcgtctagctctgtctttcttcgtctagctctgtctttcattgTCTAGCTCTGCCTTtcttcgtctagctctgtctgtcttcgtctagctctgcctgtctttcttcatctagctctgcctggcttcgtctagctctgtctttcattgtctagctctgtctttcattgtctagctctgtctgtcttcatctagcgctctgtctttcatcgtctagctctgtctttcttcgtctatctctgtctttcttcgtctatctctgtctttgtctagctctgtctgtctttgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctttcttcgtctagctctgtctttcattgtctagctctgtctttcattgTCTAGCTCTGCCTTTCTT

Function

NR:

description
intestinal mucin-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3266 False 1076 lncRNA 0.42 2 3634581 3636505
TU3267 True 868 lncRNA 0.37 2 3635087 3636505

Neighbor

gene id symbol gene type direction distance location
bcl6aa LOC106574104 coding upstream 9999 3602663 ~ 3624582 (+)
LOC118966170 NA coding upstream 234433 3399426 ~ 3400148 (+)
LOC110531937 LOC106574099 coding upstream 1054273 2538334 ~ 2580308 (+)
zbtb11 LOC106560622 coding upstream 1376256 2212135 ~ 2258325 (+)
dpt LOC106574207 coding upstream 1441686 2176672 ~ 2192895 (+)
LOC118965227 NA coding downstream 186631 3822517 ~ 3826226 (+)
trnap-cgg NA coding downstream 211118 3847623 ~ 3847694 (+)
trnap-ugg NA coding downstream 211383 3847888 ~ 3847959 (+)
im:7152348 LOC106573986 coding downstream 212012 3848517 ~ 3853009 (+)
agxta LOC105025628 coding downstream 1312222 4948727 ~ 4957086 (+)
G2481 NA non-coding upstream 86642 3547343 ~ 3547939 (+)
G2440 NA non-coding upstream 105920 3437268 ~ 3528661 (+)
G2459 NA non-coding upstream 157234 3476409 ~ 3477347 (+)
G2446 NA non-coding upstream 180443 3452983 ~ 3454138 (+)
G2401 NA non-coding upstream 274517 3357806 ~ 3360064 (+)
G2525 NA non-coding downstream 163 3636668 ~ 3637054 (+)
G2426 NA non-coding downstream 13611 3650116 ~ 3672502 (+)
G2559 NA non-coding downstream 119718 3756223 ~ 3764597 (+)
G2570 NA non-coding downstream 143784 3780289 ~ 3780678 (+)
G2585 NA non-coding downstream 177411 3813916 ~ 3814205 (+)
G2464 NA other upstream 131000 3503269 ~ 3503581 (+)
G2343 NA other upstream 418347 3214697 ~ 3216234 (+)
G2016 NA other upstream 989412 2644335 ~ 2645169 (+)
G998 LOC106576565 other upstream 1371016 2258883 ~ 2305334 (+)
G961 NA other upstream 1554978 2078898 ~ 2079603 (+)
G3176 NA other downstream 538818 4175323 ~ 4178073 (+)
G3234 NA other downstream 762399 4398904 ~ 4399444 (+)
G3351 NA other downstream 803461 4439966 ~ 4441908 (+)
G3596 NA other downstream 1218016 4854521 ~ 4856248 (+)
G3597 NA other downstream 1220020 4856525 ~ 4857065 (+)

Expression


Co-expression Network