G2963


Basic Information

Item Value
gene id G2963
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3867734 ~ 3871079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU3850
TGGTTTTTGTAATAAGTCATGTTTATTCATGGTTAGGGACATGCTAAATCTCTATACAGTGGGAGTGGAGAACAAGCTCCGCTCCGAGTCGTTAACTAACCAGGTTctagcatagaaatagaatctatAGAAGGGGTCTCCCCATTCACGTCAGTGACGTCATAATGGGTGGGCTGGCAGCCATTAGGAGTGTACCCATAGGAGCACATGTACCCCACTAGTTTAGCAGTCAAAACTGCCAGATTTAGAGGTTCTAAGCCCTTTCTaaagattatatttctatggtattGCTGCTAGTCTGGGAAAGATTTGTCGGGAAATATTCACAAGCATGTCTATTAGTTTGAGGAGAGAAAATAAGCTGCAGTTTTGTTACAAGAACACCGACTGTGAAAGATGCATCTGTACAGCATTTTGACAGTTAAAAACCACGGAACACATTTGTCTCGTGAGAAAAGACCGAGTAAGATGACGTTGCTTGATTAACTACATTTAAACCTCAGGTTTGCATGAAGCATAAAATACCTatcctacagacagagagacagactacatGATCTACAGTACACCACACCTAATCAGGGATGGGCAGGCTGGCCTTCAGCCTCAATGTACAGCATGACCCAACTCATCTAGCAGTCGGCACATCACATTGGttgtccccccccaaaaaattgcatcctattccctatatagtgcactactatagaccagagccctattccctatatagtgcactactcttgaccagagccctatttcctatataatgcactactttagaccagagccctattccctatatagtgcactacttttgaccaagacctggaaagagggtgccatttgggacaaagacaCGACGTTCTCTCAAAGTTGCTGTGGCGTCGCAGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCTCAGGATTGTGACACTAACTATAGTCCTGCtatagtggagaggaggaggctgtACCCAGgtcaggagaggagagaacacactgtctctagtcctgttatagtggagaggaggaggctgtACCCAGGTCAggagaaaacaaaaaaacaaaaaccaacaagtgtacagtacaatagaaTTAATCAATCCCCCCTCACTGGTTTCTGGTGCAGCGGTATGTTTC
>TU3848
AGGGGTCTCCCCATTCACGTCAGTGACGTCATAATGGGTGGGCTGGCAGCCATTAGGAGTGTACCCATAGGAGCACATGTACCCCACTAGTTTAGCAGTCAAAACTGCCAGATTTAGAGGTTCTAAGCCCTTTCTaaagattatatttctatggtattGCTGCTAGTCTGGGAAAGATTTGTCGGGAAATATTCACAAGCATGTCTATTAGTTTGAGGAGAGAAAATAAGCTGCAGTTTTGTTACAAGAACACCGACTGTGAAAGATGCATCTGTACAGCATTTTGACAGTTAAAAACCACGGAACACATTTGTCTCGTGAGAAAAGACCGAGTAAGATGACGTTGCTTGATTAACTACATTTAAACCTCAGGTTTGCATGAAGCATAAAATACCTatcctacagacagagagacagactacatGATCTACAGTACACCACACCTAATCAGGGATGGGCAGGCTGGCCTTCAGCCTCAATGTACAGCATGACCCAACTCATCTAGCAGTCGGCACATCACATTGGttgtccccccccaaaaaattgcatcctattccctatatagtgcactactatagaccagagccctattccctatatagtgcactactcttgaccagagccctatttcctatataatgcactactttagaccagagccctattccctatatagtgcactacttttgaccaagacctggaaagagggtgccatttgggacaaagacaCGACGTTCTCTCAAAGTTGCTGTGGCGTCGCAGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCAACATCATCCCATCAACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCCACATTAAAACATTGTCCCATCAACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCTCAGGATTGTGACACTAACTATAGTCCTGCtatagtggagaggaggaggctgtACCCAGGTCAGGGGAGGagataacacactgtctctagtcCTGCtatagtggagaggaggaggctgtACCCAGGTCAGGAGAAAACACATTAACTCTAGTCCTGCtatagtggagaggaggaggctgtacccaggtcaggagaggagagaacacactGTCTCTAGTCCTGCtatagtggagaggaggaggctgtACCCAGgtcaggagaggagataacacactgtctctagtcctgttatagtggagaggaggaggctgtACCCAGGTCAGGGGAGGAGATAACACATTAACTCTAGTCCTGCtatagtggagaggaggaggctgtacccaggtcaggagaggagagaacacactgtctctagtcctgttatagtggagaggaggaggctgtACCCAGgtcaggagaggagagaacacactGTCTCTAGTCCTGCtatagtggagaggaggaggctgtACCCAGGTCAGGAGAAAACACATTAACTCTAGTCCTGCtatagtggagaggaggaggctgtACCCAGGTCAGGAGAAAACACATTAACTCTAGTCCTGCtatagtggagaggaggaggctgtACCCAGGTCAGGGGAGGAGAGAACACACTGTCTCTAGTCCTGCtatagtggagaggaggaggctgtACCCAGGTCAGGGGAGGAGAGAACACACTGTCTCTAGTCCTGCtatagtggagaggaggaggctgtACCCAGGTCAggagaaaacaaaaaaacaaaaaccaacaagtgtacagtacaatagaaTTAATCAATCCCCCCTCACTGGTTTCTGGTGCAGCGGTATGTTTC
>TU3849
AGGGGTCTCCCCATTCACGTCAGTGACGTCATAATGGGTGGGCTGGCAGCCATTAGGAGTGTACCCATAGGAGCACATGTACCCCACTAGTTTAGCAGTCAAAACTGCCAGATTTAGAGGTTCTAAGCCCTTTCTaaagattatatttctatggtattGCTGCTAGTCTGGGAAAGATTTGTCGGGAAATATTCACAAGCATGTCTATTAGTTTGAGGAGAGAAAATAAGCTGCAGTTTTGTTACAAGAACACCGACTGTGAAAGATGCATCTGTACAGCATTTTGACAGTTAAAAACCACGGAACACATTTGTCTCGTGAGAAAAGACCGAGTAAGATGACGTTGCTTGATTAACTACATTTAAACCTCAGGTTTGCATGAAGCATAAAATACCTatcctacagacagagagacagactacatGATCTACAGTACACCACACCTAATCAGGGATGGGCAGGCTGGCCTTCAGCCTCAATGTACAGCATGACCCAACTCATCTAGCAGTCGGCACATCACATTGGttgtccccccccaaaaaattgcatcctattccctatatagtgcactactatagaccagagccctattccctatatagtgcactactcttgaccagagccctatttcctatataatgcactactttagaccagagccctattccctatatagtgcactacttttgaccaagacctggaaagagggtgccatttgggacaaagacaCGACGTTCTCTCAAAGTTGCTGTGGCGTCGCAGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCAACATCATCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCCACATTAAAACATTGTCCCATCAACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCTCAGGATTGTGACACTAACTATAGTCCTGCtatagtggagaggaggaggctgtACCCAGGTCAGGGGAGGagataacacactgtctctagtcCTGCtatagtggagaggaggaggctgtACCCAGGTCAGGGGAGGAGAGAACACACTGTCTCTAGTCCTGCtatagtggagaggaggaggctgtACCCAGGTCAGGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3850 False 1297 lncRNA 0.43 4 3867734 3871079
TU3848 False 1935 lncRNA 0.47 5 3867865 3871079
TU3849 True 1247 lncRNA 0.53 3 3867865 3870281

Neighbor

gene id symbol gene type direction distance location
im:7152348 LOC106573986 coding upstream 14725 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 19775 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 20040 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 41869 3822517 ~ 3826226 (+)
bcl6aa LOC106574104 coding upstream 243152 3602663 ~ 3624582 (+)
agxta LOC105025628 coding downstream 1077648 4948727 ~ 4957086 (+)
LOC110526525 LOC106613452 coding downstream 1793092 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 2687988 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 2813020 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 3157471 7028550 ~ 7056518 (+)
G2958 NA non-coding upstream 2459 3865001 ~ 3865275 (+)
G2585 NA non-coding upstream 53529 3813916 ~ 3814205 (+)
G2570 NA non-coding upstream 87056 3780289 ~ 3780678 (+)
G2559 NA non-coding upstream 103137 3756223 ~ 3764597 (+)
G2971 NA non-coding downstream 9816 3880895 ~ 3881979 (+)
G2978 NA non-coding downstream 23012 3894091 ~ 3894468 (+)
G2979 NA non-coding downstream 25509 3896588 ~ 3906272 (+)
G2990 NA non-coding downstream 60571 3931650 ~ 3933618 (+)
G2992 NA non-coding downstream 66714 3937793 ~ 3938145 (+)
G2464 NA other upstream 364153 3503269 ~ 3503581 (+)
G2343 NA other upstream 651500 3214697 ~ 3216234 (+)
G2016 NA other upstream 1222565 2644335 ~ 2645169 (+)
G998 LOC106576565 other upstream 1604169 2258883 ~ 2305334 (+)
G961 NA other upstream 1788131 2078898 ~ 2079603 (+)
G3176 NA other downstream 304244 4175323 ~ 4178073 (+)
G3234 NA other downstream 527825 4398904 ~ 4399444 (+)
G3351 NA other downstream 568887 4439966 ~ 4441908 (+)
G3596 NA other downstream 983442 4854521 ~ 4856248 (+)
G3597 NA other downstream 985446 4856525 ~ 4857065 (+)

Expression


Co-expression Network