G2971


Basic Information

Item Value
gene id G2971
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3880895 ~ 3881979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU3862
aacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgaggtctactacacctgttgtattcagcatttcactgcaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtccactacacctgttgtattcagcatttcactgtgaggtctacctacacctgttgtatccagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttttattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttttattcagcatttcactgtaaggtctactacacctgttgtattcagcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3862 True 552 lncRNA 0.41 2 3880895 3881979

Neighbor

gene id symbol gene type direction distance location
im:7152348 LOC106573986 coding upstream 27886 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 32936 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 33201 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 55030 3822517 ~ 3826226 (+)
bcl6aa LOC106574104 coding upstream 256313 3602663 ~ 3624582 (+)
agxta LOC105025628 coding downstream 1066748 4948727 ~ 4957086 (+)
LOC110526525 LOC106613452 coding downstream 1782192 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 2677088 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 2802120 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 3146571 7028550 ~ 7056518 (+)
G2963 NA non-coding upstream 9816 3867734 ~ 3871079 (+)
G2958 NA non-coding upstream 15620 3865001 ~ 3865275 (+)
G2585 NA non-coding upstream 66690 3813916 ~ 3814205 (+)
G2570 NA non-coding upstream 100217 3780289 ~ 3780678 (+)
G2978 NA non-coding downstream 12112 3894091 ~ 3894468 (+)
G2979 NA non-coding downstream 14609 3896588 ~ 3906272 (+)
G2990 NA non-coding downstream 49671 3931650 ~ 3933618 (+)
G2992 NA non-coding downstream 55814 3937793 ~ 3938145 (+)
G3002 NA non-coding downstream 79255 3961234 ~ 3962364 (+)
G2464 NA other upstream 377314 3503269 ~ 3503581 (+)
G2343 NA other upstream 664661 3214697 ~ 3216234 (+)
G2016 NA other upstream 1235726 2644335 ~ 2645169 (+)
G998 LOC106576565 other upstream 1617330 2258883 ~ 2305334 (+)
G961 NA other upstream 1801292 2078898 ~ 2079603 (+)
G3176 NA other downstream 293344 4175323 ~ 4178073 (+)
G3234 NA other downstream 516925 4398904 ~ 4399444 (+)
G3351 NA other downstream 557987 4439966 ~ 4441908 (+)
G3596 NA other downstream 972542 4854521 ~ 4856248 (+)
G3597 NA other downstream 974546 4856525 ~ 4857065 (+)

Expression


Co-expression Network