G2979


Basic Information

Item Value
gene id G2979
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3896588 ~ 3906272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU3874
cctctgtagttagtagaacatggtcccctgtagctcagttagtagaacatggtcctctgtagttaatagaacatggtcctctgtagctcagttagtagaacatggtcctctgtagttcagttggtagagcatggtcctctgtagttcagttagtataacatggttctctgtagttcagttagtagaacatggtcctctgtagttagtagaacatggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttggtagagcatggtcctctgtagttcagtgagtagaacatggtcatctgtagttcagttagtagaacatagtcctctgtagttcagttagtagaacatggttctctgtagttcagttggtagaacatggtactCTGTAGTTCAGtgagtagaacatggtcctctgtagttcagttagtagaacatggttctctgtagttcagttagtagaacatggtcctctgtagttcagttggtagaacatggtcctctgtagttagtagagcatggtcctctgtagttcagttagtagaacatggttctctgtagttcagttagtagaacatggtcctctgtagttcagttggtagaacatggtcctctgtagttagtagaacatggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatggttctctgtagttcagttagtagaacatggccctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatggttctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatgatcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3874 True 954 lncRNA 0.49 4 3896588 3906272

Neighbor

gene id symbol gene type direction distance location
im:7152348 LOC106573986 coding upstream 43579 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 48629 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 48894 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 70723 3822517 ~ 3826226 (+)
bcl6aa LOC106574104 coding upstream 272006 3602663 ~ 3624582 (+)
agxta LOC105025628 coding downstream 1042455 4948727 ~ 4957086 (+)
LOC110526525 LOC106613452 coding downstream 1757899 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 2652795 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 2777827 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 3122278 7028550 ~ 7056518 (+)
G2978 NA non-coding upstream 2120 3894091 ~ 3894468 (+)
G2971 NA non-coding upstream 14609 3880895 ~ 3881979 (+)
G2963 NA non-coding upstream 25509 3867734 ~ 3871079 (+)
G2958 NA non-coding upstream 31313 3865001 ~ 3865275 (+)
G2990 NA non-coding downstream 25378 3931650 ~ 3933618 (+)
G2992 NA non-coding downstream 31521 3937793 ~ 3938145 (+)
G3002 NA non-coding downstream 54962 3961234 ~ 3962364 (+)
G3012 NA non-coding downstream 73406 3979678 ~ 3982265 (+)
G3032 NA non-coding downstream 131340 4037612 ~ 4040640 (+)
G2464 NA other upstream 393007 3503269 ~ 3503581 (+)
G2343 NA other upstream 680354 3214697 ~ 3216234 (+)
G2016 NA other upstream 1251419 2644335 ~ 2645169 (+)
G998 LOC106576565 other upstream 1633023 2258883 ~ 2305334 (+)
G961 NA other upstream 1816985 2078898 ~ 2079603 (+)
G3176 NA other downstream 269051 4175323 ~ 4178073 (+)
G3234 NA other downstream 492632 4398904 ~ 4399444 (+)
G3351 NA other downstream 533694 4439966 ~ 4441908 (+)
G3596 NA other downstream 948249 4854521 ~ 4856248 (+)
G3597 NA other downstream 950253 4856525 ~ 4857065 (+)

Expression


Co-expression Network