G3002


Basic Information

Item Value
gene id G3002
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3961234 ~ 3962364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU3904
TCCTACAGTAGGTATACCAGTCACTCTCCTACAGTAGGTATACCAGTCACtctcctactgtctctgtatACCAGTCACTCTCCTACTGTCTGTATACCAGTCACTCTCCTACTGTCTGTATACCAGTCACTCTCCTACTGTCTGTATACCAGTCACTCTCCTACTGTCTGTATACCAGTCACTCTCCTACTGTCTGTATTCCAGACAATCTATATTCAGTGTTGTAaagatgtacaaatggtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3904 True 243 lncRNA 0.40 2 3961234 3962364

Neighbor

gene id symbol gene type direction distance location
im:7152348 LOC106573986 coding upstream 108225 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 113275 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 113540 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 135369 3822517 ~ 3826226 (+)
bcl6aa LOC106574104 coding upstream 336652 3602663 ~ 3624582 (+)
agxta LOC105025628 coding downstream 986363 4948727 ~ 4957086 (+)
LOC110526525 LOC106613452 coding downstream 1701807 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 2596703 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 2721735 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 3066186 7028550 ~ 7056518 (+)
G2992 NA non-coding upstream 23089 3937793 ~ 3938145 (+)
G2990 NA non-coding upstream 27616 3931650 ~ 3933618 (+)
G2979 NA non-coding upstream 54962 3896588 ~ 3906272 (+)
G2978 NA non-coding upstream 66766 3894091 ~ 3894468 (+)
G2971 NA non-coding upstream 79255 3880895 ~ 3881979 (+)
G3012 NA non-coding downstream 17314 3979678 ~ 3982265 (+)
G3032 NA non-coding downstream 75248 4037612 ~ 4040640 (+)
G3033 NA non-coding downstream 80509 4042873 ~ 4043357 (+)
G3040 NA non-coding downstream 91511 4053875 ~ 4054431 (+)
G3043 NA non-coding downstream 108795 4071159 ~ 4078757 (+)
G2464 NA other upstream 457653 3503269 ~ 3503581 (+)
G2343 NA other upstream 745000 3214697 ~ 3216234 (+)
G2016 NA other upstream 1316065 2644335 ~ 2645169 (+)
G998 LOC106576565 other upstream 1697669 2258883 ~ 2305334 (+)
G961 NA other upstream 1881631 2078898 ~ 2079603 (+)
G3176 NA other downstream 212959 4175323 ~ 4178073 (+)
G3234 NA other downstream 436540 4398904 ~ 4399444 (+)
G3351 NA other downstream 477602 4439966 ~ 4441908 (+)
G3596 NA other downstream 892157 4854521 ~ 4856248 (+)
G3597 NA other downstream 894161 4856525 ~ 4857065 (+)

Expression


Co-expression Network