G3177


Basic Information

Item Value
gene id G3177
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4178090 ~ 4182831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU4121
tatacaacgttactggatactatacgatgttactggaaactatacgacgttactggatactatacgacgttactggatactatacaatgttactggatactatacaacgttactggatactatacgacgttactggatactatacgacgttactagatactatacgacgttactggatactatacgacgttactggatactatacgacgttactgaataagatgttactggatactatacgacgttactggataagatgttactggatactatacgatgttactggatactatacgacgttactggatactataagatgttactggatactatacgacgttactggatac

Function

NR:

description
Repetitive proline-rich cell wall protein 2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4121 True 350 lncRNA 0.43 2 4178090 4182831

Neighbor

gene id symbol gene type direction distance location
im:7152348 LOC106573986 coding upstream 325081 3848517 ~ 3853009 (+)
trnap-ugg NA coding upstream 330131 3847888 ~ 3847959 (+)
trnap-cgg NA coding upstream 330396 3847623 ~ 3847694 (+)
LOC118965227 NA coding upstream 352225 3822517 ~ 3826226 (+)
bcl6aa LOC106574104 coding upstream 553508 3602663 ~ 3624582 (+)
agxta LOC105025628 coding downstream 765896 4948727 ~ 4957086 (+)
LOC110526525 LOC106613452 coding downstream 1481340 5664171 ~ 5767693 (+)
LOC110527749 armc9 coding downstream 2376236 6559067 ~ 6651795 (+)
b3gnt7 b3gnt7 coding downstream 2501268 6684099 ~ 6700304 (+)
alpi.1 LOC106574189 coding downstream 2845719 7028550 ~ 7056518 (+)
G3168 NA non-coding upstream 22641 4152760 ~ 4155449 (+)
G3155 NA non-coding upstream 48089 4128422 ~ 4130001 (+)
G3151 NA non-coding upstream 53413 4124174 ~ 4124677 (+)
G3045 NA non-coding upstream 98674 4076920 ~ 4079416 (+)
G3043 NA non-coding upstream 99333 4071159 ~ 4078757 (+)
G3178 NA non-coding downstream 4201 4187032 ~ 4187583 (+)
G3183 NA non-coding downstream 18984 4201815 ~ 4210951 (+)
G3184 NA non-coding downstream 22625 4205456 ~ 4206010 (+)
G3198 NA non-coding downstream 78684 4261515 ~ 4263074 (+)
G3202 sned1 non-coding downstream 94337 4277168 ~ 4277440 (+)
G3176 NA other upstream 17 4175323 ~ 4178073 (+)
G2464 NA other upstream 674509 3503269 ~ 3503581 (+)
G2343 NA other upstream 961856 3214697 ~ 3216234 (+)
G2016 NA other upstream 1532921 2644335 ~ 2645169 (+)
G998 LOC106576565 other upstream 1914525 2258883 ~ 2305334 (+)
G3234 NA other downstream 216073 4398904 ~ 4399444 (+)
G3351 NA other downstream 257135 4439966 ~ 4441908 (+)
G3596 NA other downstream 671690 4854521 ~ 4856248 (+)
G3597 NA other downstream 673694 4856525 ~ 4857065 (+)
G5276 NA other downstream 2334651 6517482 ~ 6518189 (+)

Expression


Co-expression Network